LOC_Os04g34140 (Os04g0418500)


Aliases : Os04g0418500

Description : 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. plant U-box 29 (PUB29)


Gene families : OG_01_0000079 (Gene family) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os04g34140
Cluster HCCA cluster: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AT2G35930 PUB23 plant U-box 23 0.04 Gene family
AT3G11840 PUB24 plant U-box 24 0.06 Gene family
AT5G64660 CMPG2, ATCMPG2 CYS, MET, PRO, and GLY protein 2 0.02 Gene family
GSVIVT01011139001 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.04 Gene family
GSVIVT01011140001 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.06 Gene family
GSVIVT01026542001 No alias 27.3.64 RNA.regulation of transcription.PHOR1 "CYS, MET,... 0.05 Gene family
LOC_Os01g64570 Os01g0865700 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.03 Gene family
LOC_Os04g49970 Os04g0589700 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
MA_10430196g0010 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
MA_10432981g0010 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
MA_126399g0010 No alias 27.3.64 RNA.regulation of transcription.PHOR1 plant... 0.02 Gene family
MA_1663g0020 No alias 27.3.64 RNA.regulation of transcription.PHOR1 plant... 0.02 Gene family
MA_33190g0010 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
MA_684442g0010 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.03 Gene family
MA_8837995g0010 No alias 27.3.64 RNA.regulation of transcription.PHOR1 plant... 0.02 Gene family
MA_95662g0020 No alias 27.3.64 RNA.regulation of transcription.PHOR1 plant... 0.03 Gene family
Solyc01g007010.3.1 Solyc01g007010.3 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.03 Gene family
Solyc01g007020.3.1 Solyc01g007020.3 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.03 Gene family
Solyc01g007030.3.1 Solyc01g007030.3 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.03 Gene family
Solyc01g007040.3.1 Solyc01g007040.3 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.03 Gene family
Solyc01g007050.2.1 Solyc01g007050.2 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
Solyc01g107980.3.1 Solyc01g107980.3 27.3.64 RNA.regulation of transcription.PHOR1 plant... 0.03 Gene family
Solyc06g074140.1.1 Solyc06g074140.1 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.03 Gene family
Solyc11g005700.1.1 Solyc11g005700.1 27.3.64 RNA.regulation of transcription.PHOR1 "CYS, MET,... 0.02 Gene family
Solyc11g068920.1.1 Solyc11g068920.1 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
Solyc11g068940.1.1 Solyc11g068940.1 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.06 Gene family
Zm00001d001769 GRMZM2G013776 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.04 Gene family
Zm00001d002498 GRMZM2G092128 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
Zm00001d003745 GRMZM2G098128 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
Zm00001d016719 GRMZM2G303964 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
Zm00001d016730 GRMZM2G071484 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
Zm00001d023480 GRMZM2G031624 35.1 not assigned.no ontology TTF-type zinc finger... 0.04 Gene family
Zm00001d024672 GRMZM2G304010 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.04 Gene family
Zm00001d025379 GRMZM2G059042 27.3.64 RNA.regulation of transcription.PHOR1 "CYS, MET,... 0.04 Gene family
Zm00001d042738 GRMZM2G135713 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan
BP GO:0016567 protein ubiquitination IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003613 Ubox_domain 37 105
No external refs found!