LOC_Os04g34140 (Os04g0418500)

Aliases : Os04g0418500

Description : 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. plant U-box 29 (PUB29)

Gene families : OG_01_0000079 (Gene family) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): LOC_Os04g34140
Cluster	HCCA cluster: Cluster_77

Target	Alias	Description	ECC score	Gene Family Method
AT2G35930	PUB23	plant U-box 23	0.04	Gene family
AT3G11840	PUB24	plant U-box 24	0.06	Gene family
AT5G64660	CMPG2, ATCMPG2	CYS, MET, PRO, and GLY protein 2	0.02	Gene family
GSVIVT01011139001	No alias	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.04	Gene family
GSVIVT01011140001	No alias	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.06	Gene family
GSVIVT01026542001	No alias	27.3.64 RNA.regulation of transcription.PHOR1 "CYS, MET,...	0.05	Gene family
LOC_Os01g64570	Os01g0865700	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.03	Gene family
LOC_Os04g49970	Os04g0589700	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.02	Gene family
MA_10430196g0010	No alias	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.02	Gene family
MA_10432981g0010	No alias	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.02	Gene family
MA_126399g0010	No alias	27.3.64 RNA.regulation of transcription.PHOR1 plant...	0.02	Gene family
MA_1663g0020	No alias	27.3.64 RNA.regulation of transcription.PHOR1 plant...	0.02	Gene family
MA_33190g0010	No alias	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.02	Gene family
MA_684442g0010	No alias	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.03	Gene family
MA_8837995g0010	No alias	27.3.64 RNA.regulation of transcription.PHOR1 plant...	0.02	Gene family
MA_95662g0020	No alias	27.3.64 RNA.regulation of transcription.PHOR1 plant...	0.03	Gene family
Solyc01g007010.3.1	Solyc01g007010.3	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.03	Gene family
Solyc01g007020.3.1	Solyc01g007020.3	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.03	Gene family
Solyc01g007030.3.1	Solyc01g007030.3	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.03	Gene family
Solyc01g007040.3.1	Solyc01g007040.3	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.03	Gene family
Solyc01g007050.2.1	Solyc01g007050.2	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.02	Gene family
Solyc01g107980.3.1	Solyc01g107980.3	27.3.64 RNA.regulation of transcription.PHOR1 plant...	0.03	Gene family
Solyc06g074140.1.1	Solyc06g074140.1	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.03	Gene family
Solyc11g005700.1.1	Solyc11g005700.1	27.3.64 RNA.regulation of transcription.PHOR1 "CYS, MET,...	0.02	Gene family
Solyc11g068920.1.1	Solyc11g068920.1	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.02	Gene family
Solyc11g068940.1.1	Solyc11g068940.1	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.06	Gene family
Zm00001d001769	GRMZM2G013776	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.04	Gene family
Zm00001d002498	GRMZM2G092128	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.02	Gene family
Zm00001d003745	GRMZM2G098128	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.02	Gene family
Zm00001d016719	GRMZM2G303964	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.02	Gene family
Zm00001d016730	GRMZM2G071484	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.02	Gene family
Zm00001d023480	GRMZM2G031624	35.1 not assigned.no ontology TTF-type zinc finger...	0.04	Gene family
Zm00001d024672	GRMZM2G304010	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.04	Gene family
Zm00001d025379	GRMZM2G059042	27.3.64 RNA.regulation of transcription.PHOR1 "CYS, MET,...	0.04	Gene family
Zm00001d042738	GRMZM2G135713	27.3.64 RNA.regulation of transcription.PHOR1 Encodes a...	0.02	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	InterProScan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	InterProScan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	37	105

External Links

No external refs found!

LOC_Os04g34140 (Os04g0418500)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation