Mp2g07230.1

Description : ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana (sp|f4jfj3|y3206_arath : 869.0)

Gene families : OG0004721 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004721_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp2g07230.1

Target	Alias	Description	ECC score	Gene Family Method
AT3G02060	No alias	DEAD/DEAH box helicase, putative	0.02	OrthoFinder output from all 47 species
Aev_g07951	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g17279	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g28280	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g22379	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0257.g060601	No alias	not classified & original description: CDS=200-3178	0.03	OrthoFinder output from all 47 species
Ceric.13G022800.1	Ceric.13G022800	not classified & original description: pacid=50636376...	0.03	OrthoFinder output from all 47 species
Dcu_g04126	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g04918	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g08581	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Gb_38755	No alias	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.04	OrthoFinder output from all 47 species
Lfl_g05693	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
MA_10436969g0010	No alias	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.02	OrthoFinder output from all 47 species
MA_9353463g0010	No alias	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.02	OrthoFinder output from all 47 species
Nbi_g10930	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g10408	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006439	No alias	not classified & original description: CDS=315-2762	0.02	OrthoFinder output from all 47 species
Smo77276	No alias	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.03	OrthoFinder output from all 47 species
Solyc02g094590.3.1	Solyc02g094590	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.05	OrthoFinder output from all 47 species
Zm00001e011170_P004	Zm00001e011170	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
MF	GO:2001070	starch binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	706	844
IPR001650	Helicase_C	892	991
IPR003711	CarD-like/TRCF_RID	557	655
IPR005118	TRCF_C	1089	1173

External Links

No external refs found!

Mp2g07230.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation