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  5. Mp2g04840.1

Mp2g04840.1 (RPT1A)


Aliases : RPT1A

Description : regulatory component RPT1 of 26S proteasome


Gene families : OG0004346 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004346_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp2g04840.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00084690 RPT1A,... Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
AT1G53750 RPT1A regulatory particle triple-A 1A 0.05 OrthoFinder output from all 47 species
Adi_g060638 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.01 OrthoFinder output from all 47 species
Aev_g11650 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Aob_g05064 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Aop_g01687 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031375 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cba_g07403 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Cba_g10512 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Cba_g78469 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Ceric.30G008600.1 RPT1A, Ceric.30G008600 regulatory component *(RPT1) of 26S proteasome &... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021464.16 RPT1A Protein degradation.26S proteasome.regulatory... 0.05 OrthoFinder output from all 47 species
Cre14.g625400 RPT1A Protein degradation.26S proteasome.regulatory... 0.17 OrthoFinder output from all 47 species
Dcu_g01171 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Dde_g03314 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
GSVIVT01016655001 RPT1A Protein degradation.26S proteasome.regulatory... 0.04 OrthoFinder output from all 47 species
Gb_11942 RPT1A regulatory component RPT1 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Gb_26075 RPT1A regulatory component RPT1 of 26S proteasome 0.04 OrthoFinder output from all 47 species
LOC_Os02g54340.1 RPT1A, LOC_Os02g54340 regulatory component RPT1 of 26S proteasome 0.06 OrthoFinder output from all 47 species
LOC_Os06g09290.2 RPT1A, LOC_Os06g09290 regulatory component RPT1 of 26S proteasome 0.06 OrthoFinder output from all 47 species
Len_g10926 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
MA_10428715g0010 RPT1A regulatory component RPT1 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Msp_g08271 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Nbi_g10523 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Pp3c20_1430V3.1 RPT1A, Pp3c20_1430 regulatory particle triple-A 1A 0.05 OrthoFinder output from all 47 species
Sam_g36043 No alias regulatory component *(RPT1) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Smo146742 RPT1A Protein degradation.26S proteasome.regulatory... 0.05 OrthoFinder output from all 47 species
Solyc03g123730.4.1 RPT1A, Solyc03g123730 regulatory component RPT1 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Solyc06g063140.4.1 RPT1A, Solyc06g063140 regulatory component RPT1 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Spa_g06127 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Tin_g02668 RPT1A regulatory component *(RPT1) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Zm00001e016066_P001 RPT1A, Zm00001e016066 regulatory component RPT1 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Zm00001e023743_P001 RPT1A, Zm00001e023743 regulatory component RPT1 of 26S proteasome 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 360 404
IPR003959 ATPase_AAA_core 205 337
No external refs found!