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Aliases : ATHDA19, HDA1, HD1, ATHD1, HDA19, RPD3A
Description : class-I histone deacetylase. deacetylase component HDA19 of SNL-HDA19 histone deacetylase complex
Gene families : OG0000827 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000827_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Adi_g059559 | ATHDA19, HDA1,... | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g12131 | HDA09, HDA9 | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g17266 | ATHDA19, HDA1,... | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g18348 | ATHDA19, HDA1,... | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.25G049900.1 | ATHDA19, HDA1,... | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000113.44 | ATHDA19, HDA1,... | Chromatin organisation.histone modifications.histone... | 0.02 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000215.121 | ATHDA19, HDA1,... | Chromatin organisation.histone modifications.histone... | 0.04 | OrthoFinder output from all 47 species | |
| Cre09.g387393 | ATHDA19, HDA1,... | Chromatin organisation.histone modifications.histone... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g20808 | ATHDA19, HDA1,... | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01023839001 | ATHDA19, HDA1,... | Chromatin organisation.histone modifications.histone... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_10850 | HDA6, RTS1,... | class-I histone deacetylase. deacetylase component HDA19... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os04g33480.1 | HDA09, HDA9,... | class-I histone deacetylase | 0.02 | OrthoFinder output from all 47 species | |
| MA_9079g0010 | HDA09, HDA9 | Histone deacetylase 9 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
| MA_97739g0010 | HDA09, HDA9 | class-I histone deacetylase | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g17652 | ATHDA19, HDA1,... | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g05454 | ATHDA19, HDA1,... | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g09414 | HDA09, HDA9 | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g00933 | HDA09, HDA9 | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g03843 | ATHDA19, HDA1,... | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0013.g005747 | ATHDA19, HDA1,... | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g11977 | No alias | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.01 | OrthoFinder output from all 47 species | |
| Sam_g12093 | No alias | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g17216 | No alias | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g18068 | ATHDA19, HDA1,... | EC_3.5 hydrolase acting on carbon-nitrogen bond, other... | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g03412 | ATHDA19, HDA1,... | EC_3.5 hydrolase acTing on carbon-nitrogen bond, other... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e008229_P001 | HDA09, HDA9,... | class-I histone deacetylase. component HDA9 of HDA9-PWR... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0002097 | tRNA wobble base modification | IEP | HCCA |
| BP | GO:0002098 | tRNA wobble uridine modification | IEP | HCCA |
| MF | GO:0003689 | DNA clamp loader activity | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| CC | GO:0005663 | DNA replication factor C complex | IEP | HCCA |
| BP | GO:0006260 | DNA replication | IEP | HCCA |
| BP | GO:0006400 | tRNA modification | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
| CC | GO:0033588 | elongator holoenzyme complex | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR023801 | His_deacetylse_dom | 36 | 324 |
| No external refs found! |