Mp1g28730.1 (SVR1)

Aliases : SVR1

Description : rRNA pseudouridine synthase (RsuA)

Gene families : OG0003742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003742_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp1g28730.1

Target	Alias	Description	ECC score	Gene Family Method
Aev_g04687	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.03	OrthoFinder output from all 47 species
Dcu_g06821	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.02	OrthoFinder output from all 47 species
GSVIVT01016221001	SVR1	RNA processing.RNA...	0.02	OrthoFinder output from all 47 species
LOC_Os03g05806.1	SVR1, LOC_Os03g05806	rRNA pseudouridine synthase (RsuA)	0.03	OrthoFinder output from all 47 species
Len_g30464	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.02	OrthoFinder output from all 47 species
Lfl_g16475	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0123.g021502	SVR1	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.02	OrthoFinder output from all 47 species
Sam_g12462	No alias	plastidial rRNA pseudouridine synthase *(SVR1) &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002942	S4_RNA-bd	256	298
IPR006145	PsdUridine_synth_RsuA/RluA	319	461

External Links

No external refs found!