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  5. Mp1g26290.1

Mp1g26290.1 (RAD23B, RAD23)


Aliases : RAD23B, RAD23

Description : shuttle protein (RAD23)


Gene families : OG0001068 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g26290.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00156p00078120 RAD23D,... Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica 0.04 OrthoFinder output from all 47 species
Aev_g45033 RAD23D ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Als_g20571 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.04 OrthoFinder output from all 47 species
Aop_g31214 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Cba_g67782 RAD23A ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Ceric.37G011200.1 RAD23B, RAD23,... ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.21 RAD23D Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre08.g366400 RAD23B, RAD23 Ubiquitin receptor RAD23b OS=Arabidopsis thaliana 0.11 OrthoFinder output from all 47 species
Dcu_g06924 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g05747 RAD23A ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os08g33340.1 RAD23D, LOC_Os08g33340 shuttle protein (RAD23) 0.04 OrthoFinder output from all 47 species
LOC_Os09g24200.1 RAD23D, LOC_Os09g24200 shuttle protein (RAD23) 0.04 OrthoFinder output from all 47 species
Len_g13341 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.06 OrthoFinder output from all 47 species
Len_g27857 RAD23A ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.06 OrthoFinder output from all 47 species
Msp_g06770 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g04293 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Pir_g08671 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g63807 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015747 RAD23D ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Smo77427 RAD23B, RAD23 Ubiquitin receptor RAD23b OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Smo82644 RAD23B, RAD23 Ubiquitin receptor RAD23b OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc02g085840.2.1 RAD23D, Solyc02g085840 shuttle protein (RAD23) 0.03 OrthoFinder output from all 47 species
Tin_g08949 RAD23-3, RAD23C ubiquiTin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Tin_g19292 RAD23B, RAD23 ubiquiTin-proteasome shuttle factor *(RAD23) & original... 0.05 OrthoFinder output from all 47 species
Zm00001e025088_P005 RAD23B, RAD23,... shuttle protein (RAD23) 0.03 OrthoFinder output from all 47 species
Zm00001e030951_P001 RAD23D, Zm00001e030951 shuttle protein (RAD23) 0.06 OrthoFinder output from all 47 species
Zm00001e036768_P002 RAD23D, Zm00001e036768 shuttle protein (RAD23) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006289 nucleotide-excision repair IEA Interproscan
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR015940 UBA 358 393
IPR015940 UBA 166 204
IPR000626 Ubiquitin-like_dom 3 76
IPR015360 XPC-bd 276 332
No external refs found!