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  5. Mp1g25580.1

Mp1g25580.1


Description : Pentatricopeptide repeat-containing protein At1g26460, mitochondrial OS=Arabidopsis thaliana (sp|q9fzd1|ppr58_arath : 317.0)


Gene families : OG0003481 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003481_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g25580.1
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00121530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g26460,... 0.03 OrthoFinder output from all 47 species
AT1G26460 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 OrthoFinder output from all 47 species
Adi_g080395 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g084407 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G090700.1 Ceric.07G090700 not classified & original description: pacid=50627222... 0.02 OrthoFinder output from all 47 species
Dcu_g09178 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01012211001 No alias Pentatricopeptide repeat-containing protein At1g26460,... 0.02 OrthoFinder output from all 47 species
Gb_21554 No alias Pentatricopeptide repeat-containing protein At1g26460,... 0.05 OrthoFinder output from all 47 species
LOC_Os07g40800.1 LOC_Os07g40800 Pentatricopeptide repeat-containing protein At1g26460,... 0.1 OrthoFinder output from all 47 species
MA_10436610g0010 No alias Pentatricopeptide repeat-containing protein At1g26460,... 0.04 OrthoFinder output from all 47 species
Msp_g11856 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18161 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g012390.4.1 Solyc05g012390 Pentatricopeptide repeat-containing protein At1g26460,... 0.09 OrthoFinder output from all 47 species
Spa_g26358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e010701_P001 Zm00001e010701 Pentatricopeptide repeat-containing protein At1g26460,... 0.07 OrthoFinder output from all 47 species
Zm00001e035476_P002 Zm00001e035476 Pentatricopeptide repeat-containing protein At1g26460,... 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 410 436
IPR002885 Pentatricopeptide_repeat 208 268
IPR002885 Pentatricopeptide_repeat 524 570
No external refs found!