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Description : Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana (sp|q0wmy5|pp365_arath : 769.0)
Gene families : OG0007144 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007144_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Mp1g25160.1 | |
| Cluster | HCCA: Cluster_50 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G04810 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g42769 | No alias | trans-splicing factor *(PPR4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g11518 | No alias | trans-splicing factor *(PPR4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene10935.t1 | Aspi01Gene10935 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0073.g037201 | No alias | trans-splicing factor *(PPR4) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01034651001 | No alias | Pentatricopeptide repeat-containing protein At5g04810,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_31760 | No alias | Pentatricopeptide repeat-containing protein At5g04810,... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os04g58780.1 | LOC_Os04g58780 | Pentatricopeptide repeat-containing protein At5g04810,... | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g07399 | No alias | trans-splicing factor *(PPR4) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pnu_g09198 | No alias | trans-splicing factor *(PPR4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc11g006680.3.1 | Solyc11g006680 | Pentatricopeptide repeat-containing protein At5g04810,... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e041970_P002 | Zm00001e041970 | Pentatricopeptide repeat-containing protein At5g04810,... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
| BP | GO:0006413 | translational initiation | IEP | HCCA |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | HCCA |
| MF | GO:0045182 | translation regulator activity | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR033443 | PPR_long | 623 | 765 |
| IPR002885 | Pentatricopeptide_repeat | 375 | 402 |
| IPR002885 | Pentatricopeptide_repeat | 236 | 261 |
| IPR000504 | RRM_dom | 91 | 164 |
| IPR002885 | Pentatricopeptide_repeat | 266 | 315 |
| IPR002885 | Pentatricopeptide_repeat | 546 | 595 |
| IPR002885 | Pentatricopeptide_repeat | 337 | 369 |
| IPR002885 | Pentatricopeptide_repeat | 406 | 454 |
| IPR002885 | Pentatricopeptide_repeat | 476 | 525 |
| No external refs found! |