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  5. Mp1g24510.1

Mp1g24510.1


Description : protein factor (USP39) of U4/U6 U5 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0005722 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005722_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g24510.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g105601 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.02 OrthoFinder output from all 47 species
Aop_g09374 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.04 OrthoFinder output from all 47 species
Ceric.08G005200.1 Ceric.08G005200 component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021314.13 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
Cre17.g721600 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder output from all 47 species
Gb_21040 No alias protein factor (USP39) of U4/U6 U5 small nuclear... 0.04 OrthoFinder output from all 47 species
MA_10433770g0010 No alias protein factor (USP39) of U4/U6 U5 small nuclear... 0.02 OrthoFinder output from all 47 species
Ore_g16909 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.02 OrthoFinder output from all 47 species
Ppi_g11614 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.02 OrthoFinder output from all 47 species
Sam_g07115 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.02 OrthoFinder output from all 47 species
Tin_g03365 No alias component *(USP39) of U4/U6.U5 tri-snRNP complex &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0016579 protein deubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001607 Znf_UBP 104 165
IPR001394 Peptidase_C19_UCH 205 535
No external refs found!