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  5. Mp1g24430.1

Mp1g24430.1


Description : DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana (sp|q38961|snm1_arath : 231.0)


Gene families : OG0001699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001699_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g24430.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00244350 SNM1, ATSNM1,... DNA damage response.DNA repair mechanisms.interstrand... 0.02 OrthoFinder output from all 47 species
AMTR_s00072p00037420 evm_27.TU.AmTr_v1... DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Azfi_s0093.g043334 No alias not classified & original description: CDS=1-2907 0.05 OrthoFinder output from all 47 species
Ceric.39G017300.1 Ceric.39G017300 not classified & original description: pacid=50582945... 0.02 OrthoFinder output from all 47 species
Cre09.g399907 No alias DNA ligase 6 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01000444001 No alias DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Gb_02140 SNM1, ATSNM1 SNM interstrand crosslink repair factor 0.12 OrthoFinder output from all 47 species
LOC_Os09g26760.1 LOC_Os09g26760 DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_31065g0010 No alias no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
MA_611292g0010 No alias DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Msp_g12976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g30887 SNM1, ATSNM1 interstrand crosslink repair factor *(SNM) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e009882_P001 Zm00001e009882 DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.1 OrthoFinder output from all 47 species
Zm00001e028943_P002 Zm00001e028943 DNA cross-link repair protein SNM1 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR011084 DRMBL 858 960
IPR001660 SAM 496 555
No external refs found!