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  5. Mp1g23970.1

Mp1g23970.1 (EMB2776, LIS)


Aliases : EMB2776, LIS

Description : protein factor PRPF4 of U4/U6 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0003984 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003984_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g23970.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g080388 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.01 OrthoFinder output from all 47 species
Cre16.g662800 EMB2776, LIS RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Cre16.g662852 No alias No description available 0.04 OrthoFinder output from all 47 species
Dac_g08551 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.02 OrthoFinder output from all 47 species
GSVIVT01033551001 EMB2776, LIS RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
LOC_Os03g23935.1 EMB2776, LIS,... protein factor PRPF4 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species
Nbi_g13194 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.02 OrthoFinder output from all 47 species
Ore_g19224 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.01 OrthoFinder output from all 47 species
Sam_g29759 No alias component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
CC GO:0008303 caspase complex IEP HCCA
CC GO:0042765 GPI-anchor transamidase complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR014906 PRP4-like 149 176
IPR001680 WD40_repeat 421 452
IPR001680 WD40_repeat 499 537
IPR001680 WD40_repeat 374 410
IPR001680 WD40_repeat 327 369
IPR001680 WD40_repeat 542 579
IPR001680 WD40_repeat 460 494
No external refs found!