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Description : tRNA wybutosine-synthesizing protein 2/3/4 OS=Arabidopsis thaliana (sp|q8w4k1|tyw23_arath : 85.9)
Gene families : OG0006308 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006308_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G50310 | No alias | Galactose oxidase/kelch repeat superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0188.g056788 | No alias | not classified & original description: CDS=169-2181 | 0.02 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00021017.10 | No alias | No description available | 0.02 | OrthoFinder output from all 47 species | |
| Cre09.g398200 | No alias | Nitrile-specifier protein 4 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01007548001 | No alias | No description available | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g08364 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g16567 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Smo235261 | No alias | tRNA wybutosine-synthesizing protein 2/3/4... | 0.06 | OrthoFinder output from all 47 species | |
| Solyc03g111390.4.1 | Solyc03g111390 | tRNA wybutosine-synthesizing protein 2/3/4... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e007777_P003 | Zm00001e007777 | Acyl-CoA-binding domain-containing protein 4... | 0.07 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000154 | rRNA modification | IEP | HCCA |
| BP | GO:0001510 | RNA methylation | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003724 | RNA helicase activity | IEP | HCCA |
| MF | GO:0003909 | DNA ligase activity | IEP | HCCA |
| MF | GO:0003911 | DNA ligase (NAD+) activity | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006260 | DNA replication | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
| MF | GO:0008186 | ATP-dependent activity, acting on RNA | IEP | HCCA |
| MF | GO:0008649 | rRNA methyltransferase activity | IEP | HCCA |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0016435 | rRNA (guanine) methyltransferase activity | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | HCCA |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
| BP | GO:0031167 | rRNA methylation | IEP | HCCA |
| BP | GO:0032259 | methylation | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0036265 | RNA (guanine-N7)-methylation | IEP | HCCA |
| BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
| BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| BP | GO:0070475 | rRNA base methylation | IEP | HCCA |
| BP | GO:0070476 | rRNA (guanine-N7)-methylation | IEP | HCCA |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR025183 | DUF4110 | 556 | 638 |
| No external refs found! |