Mp1g20410.1

Description : meiotic crossover formation factor (FANCD2)

Gene families : OG0007524 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007524_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp1g20410.1
Cluster	HCCA: Cluster_20

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00092p00164660	evm_27.TU.AmTr_v1...	Cell cycle.mitosis and meiosis.meiotic...	0.02	OrthoFinder output from all 47 species
Aop_g09016	No alias	meiotic crossover formation factor *(FANCD2) & original...	0.08	OrthoFinder output from all 47 species
Azfi_s0292.g063381	No alias	meiotic crossover formation factor *(FANCD2) & original...	0.04	OrthoFinder output from all 47 species
Ceric.32G015100.1	Ceric.32G015100	meiotic crossover formation factor *(FANCD2) & original...	0.03	OrthoFinder output from all 47 species
Cre10.g453650	No alias	No description available	0.06	OrthoFinder output from all 47 species
Gb_40796	No alias	no hits & (original description: none)	0.12	OrthoFinder output from all 47 species
Gb_40797	No alias	no hits & (original description: none)	0.08	OrthoFinder output from all 47 species
Gb_40798	No alias	meiotic crossover formation factor (FANCD2)	0.07	OrthoFinder output from all 47 species
Gb_40799	No alias	meiotic crossover formation factor (FANCD2)	0.06	OrthoFinder output from all 47 species
LOC_Os07g05960.1	LOC_Os07g05960	meiotic crossover formation factor (FANCD2)	0.03	OrthoFinder output from all 47 species
Len_g57489	No alias	meiotic crossover formation factor *(FANCD2) & original...	0.02	OrthoFinder output from all 47 species
Msp_g32253	No alias	meiotic crossover formation factor *(FANCD2) & original...	0.03	OrthoFinder output from all 47 species
Nbi_g24209	No alias	meiotic crossover formation factor *(FANCD2) & original...	0.08	OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015526	No alias	meiotic crossover formation factor *(FANCD2) & original...	0.02	OrthoFinder output from all 47 species
Solyc01g097110.2.1	Solyc01g097110	meiotic crossover formation factor (FANCD2)	0.02	OrthoFinder output from all 47 species
Tin_g10637	No alias	meiotic crossover formation factor *(FANCD2) & original...	0.09	OrthoFinder output from all 47 species
Zm00001e011509_P002	Zm00001e011509	meiotic crossover formation factor (FANCD2)	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
CC	GO:0000786	nucleosome	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043138	3'-5' DNA helicase activity	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR029448	FANCD2	1209	1477
IPR029448	FANCD2	77	873

External Links

No external refs found!

Mp1g20410.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation