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  5. Mp1g19410.1

Mp1g19410.1 (AtRH36, SWA3, RH36)


Aliases : AtRH36, SWA3, RH36

Description : SSU processome assembly factor (SWA3)


Gene families : OG0001703 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001703_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g19410.1
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AT1G16280 AtRH36, SWA3, RH36 RNA helicase 36 0.08 OrthoFinder output from all 47 species
Aop_g20576 AtRH36, SWA3, RH36 SSU processome assembly factor *(SWA3) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0073.g037272 No alias not classified & original description: CDS=107-1516 0.02 OrthoFinder output from all 47 species
Azfi_s0215.g058400 AtRH36, SWA3, RH36 not classified & original description: CDS=74-1108 0.02 OrthoFinder output from all 47 species
Cba_g10042 AtRH36, SWA3, RH36 SSU processome assembly factor *(SWA3) & original... 0.02 OrthoFinder output from all 47 species
Cre12.g505200 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Dcu_g01240 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01036761001 AtRH36, SWA3, RH36 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Gb_23737 AtRH36, SWA3, RH36 SSU processome assembly factor (SWA3) 0.04 OrthoFinder output from all 47 species
Gb_36370 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os03g46610.1 LOC_Os03g46610 DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
LOC_Os07g43980.1 AtRH36, SWA3,... SSU processome assembly factor (SWA3) 0.04 OrthoFinder output from all 47 species
MA_57429g0010 AtRH36, SWA3, RH36 DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_8567568g0010 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc10g007550.3.1 Solyc10g007550 DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e013281_P004 Zm00001e013281 DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
Zm00001e035639_P002 AtRH36, SWA3,... SSU processome assembly factor (SWA3) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 299 404
IPR011545 DEAD/DEAH_box_helicase_dom 89 257
No external refs found!