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  5. Mp1g19280.1

Mp1g19280.1 (NRPE6A, NRPD6A, NRPB6A)


Aliases : NRPE6A, NRPD6A, NRPB6A

Description : subunit 6 of RNA polymerase


Gene families : OG0004292 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004292_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g19280.1

Target Alias Description ECC score Gene Family Method Actions
Ala_g06175 NRPE6A, NRPD6A, NRPB6A component *(NRP-ABCDE6) of RNA polymerase complexes &... 0.02 OrthoFinder output from all 47 species
Cre01.g002200 NRPE6A, NRPD6A, NRPB6A RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
MA_131181g0010 NRPE6A, NRPD6A, NRPB6A DNA-directed RNA polymerases II, IV and V subunit 6A... 0.02 OrthoFinder output from all 47 species
Solyc09g010500.3.1 NRPB6B, NRPE6B,... subunit 6 of RNA polymerase 0.02 OrthoFinder output from all 47 species
Zm00001e012477_P001 NRPE6A, NRPD6A,... subunit 6 of RNA polymerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR006110 Pol_omega/Rpo6/RPB6 78 129
No external refs found!