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  5. Mp1g17930.1

Mp1g17930.1


Description : pre-60S ribosomal subunit assembly factor (SMO4)


Gene families : OG0004538 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004538_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g17930.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00038730 evm_27.TU.AmTr_v1... Ribosome biogenesis protein NOP53 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT2G40430 No alias CONTAINS InterPro DOMAIN/s: P60-like... 0.05 OrthoFinder output from all 47 species
Aspi01Gene51396.t1 Aspi01Gene51396 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G089700.1 Ceric.07G089700 pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.19 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre07.g348250 No alias Ribosome biogenesis protein NOP53 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Dac_g11687 No alias pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.01 OrthoFinder output from all 47 species
Dcu_g01228 No alias pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01032722001 No alias Ribosome biogenesis protein NOP53 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
LOC_Os05g05220.1 LOC_Os05g05220 pre-60S ribosomal subunit assembly factor (SMO4) 0.03 OrthoFinder output from all 47 species
Len_g01209 No alias pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.04 OrthoFinder output from all 47 species
Ore_g10103 No alias pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.02 OrthoFinder output from all 47 species
Sam_g07520 No alias pre-60S ribosomal subunit assembly factor *(SMO4) &... 0.02 OrthoFinder output from all 47 species
Solyc02g068420.4.1 Solyc02g068420 pre-60S ribosomal subunit assembly factor (SMO4) 0.03 OrthoFinder output from all 47 species
Zm00001e040405_P001 Zm00001e040405 pre-60S ribosomal subunit assembly factor (SMO4) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011687 Nop53/GLTSCR2 8 376
No external refs found!