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  5. Mp1g12860.1

Mp1g12860.1


Description : Pentatricopeptide repeat-containing protein At1g73710 OS=Arabidopsis thaliana (sp|q9c9u0|pp118_arath : 519.0)


Gene families : OG0006545 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006545_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g12860.1
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Aev_g35522 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01018090001 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.02 OrthoFinder output from all 47 species
MA_91200g0010 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 312 358
IPR002885 Pentatricopeptide_repeat 183 229
IPR002885 Pentatricopeptide_repeat 382 429
IPR002885 Pentatricopeptide_repeat 694 739
IPR002885 Pentatricopeptide_repeat 837 861
IPR002885 Pentatricopeptide_repeat 522 548
IPR002885 Pentatricopeptide_repeat 256 280
IPR002885 Pentatricopeptide_repeat 766 789
IPR002885 Pentatricopeptide_repeat 489 511
IPR002885 Pentatricopeptide_repeat 890 949
IPR002885 Pentatricopeptide_repeat 614 672
No external refs found!