Description : Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana (sp|q9lw84|pp236_arath : 266.0)
Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Mp1g09820.1 | |
Cluster | HCCA: Cluster_64 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00022p00121040 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g77360,... | 0.02 | OrthoFinder output from all 47 species | |
AMTR_s00078p00045650 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g52640,... | 0.02 | OrthoFinder output from all 47 species | |
AMTR_s00210p00017530 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g18390,... | 0.03 | OrthoFinder output from all 47 species | |
AT1G80550 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
Als_g01092 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aob_g11133 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aob_g12835 | No alias | group-II intron mitochondrial splicing factor *(MISF68)... | 0.02 | OrthoFinder output from all 47 species | |
Dac_g11222 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g03049 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g13495 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Gb_10944 | No alias | Pentatricopeptide repeat-containing protein At3g22670,... | 0.02 | OrthoFinder output from all 47 species | |
Gb_31799 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.01 | OrthoFinder output from all 47 species | |
Lfl_g29766 | OTP43 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
MA_355286g0010 | No alias | Pentatricopeptide repeat-containing protein At5g15010,... | 0.03 | OrthoFinder output from all 47 species | |
MA_933431g0010 | No alias | Pentatricopeptide repeat-containing protein At1g20300,... | 0.01 | OrthoFinder output from all 47 species | |
Nbi_g06899 | No alias | group-II intron mitochondrial splicing factor *(MISF68)... | 0.02 | OrthoFinder output from all 47 species | |
Pir_g00998 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g17038 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Solyc04g081950.4.1 | Solyc04g081950 | Pentatricopeptide repeat-containing protein At1g20300,... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g47474 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e015034_P001 | Zm00001e015034 | Pentatricopeptide repeat-containing protein At3g04130,... | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000105 | histidine biosynthetic process | IEP | HCCA |
MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004519 | endonuclease activity | IEP | HCCA |
BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006413 | translational initiation | IEP | HCCA |
BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
BP | GO:0006528 | asparagine metabolic process | IEP | HCCA |
BP | GO:0006529 | asparagine biosynthetic process | IEP | HCCA |
BP | GO:0006547 | histidine metabolic process | IEP | HCCA |
BP | GO:0008652 | amino acid biosynthetic process | IEP | HCCA |
BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | HCCA |
BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | HCCA |
BP | GO:0016053 | organic acid biosynthetic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | HCCA |
MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | HCCA |
MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | HCCA |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
BP | GO:0044283 | small molecule biosynthetic process | IEP | HCCA |
BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | HCCA |
CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | HCCA |
CC | GO:0090730 | Las1 complex | IEP | HCCA |
BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | HCCA |
CC | GO:1902555 | endoribonuclease complex | IEP | HCCA |
CC | GO:1902911 | protein kinase complex | IEP | HCCA |
CC | GO:1905348 | endonuclease complex | IEP | HCCA |
CC | GO:1905354 | exoribonuclease complex | IEP | HCCA |
CC | GO:1990234 | transferase complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 518 | 575 |
IPR002885 | Pentatricopeptide_repeat | 224 | 270 |
IPR002885 | Pentatricopeptide_repeat | 360 | 400 |
IPR002885 | Pentatricopeptide_repeat | 292 | 340 |
IPR002885 | Pentatricopeptide_repeat | 425 | 472 |
IPR002885 | Pentatricopeptide_repeat | 635 | 682 |
IPR002885 | Pentatricopeptide_repeat | 596 | 629 |
No external refs found! |