Mp1g06970.1

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 187.0)

Gene families : OG0000011 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp1g06970.1

Target	Alias	Description	ECC score	Gene Family Method
Aspi01Gene06458.t1	CRK8, Aspi01Gene06458	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene08023.t1	ORF240B, Aspi01Gene08023	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene35808.t1	Aspi01Gene35808	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene63301.t1	ORF240B, Aspi01Gene63301	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.07G026900.1	CRK8, Ceric.07G026900	not classified & original description: pacid=50626259...	0.02	OrthoFinder output from all 47 species
Dcu_g20153	ORF240B	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g39192	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c15_20380V3.1	Pp3c15_20380	No annotation	0.01	OrthoFinder output from all 47 species
Pp3c1_13760V3.1	Pp3c1_13760	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	0.01	OrthoFinder output from all 47 species
Tin_g45550	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	377	489
IPR025724	GAG-pre-integrase_dom	306	363
IPR001878	Znf_CCHC	118	134

External Links

No external refs found!