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  5. Mp1g04780.1

Mp1g04780.1 (VIM1, ORTH2)


Aliases : VIM1, ORTH2

Description : E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana (sp|q8vyz0|orth2_arath : 612.0)


Gene families : OG0003058 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g04780.1
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AT4G08590 ORTHL, ORL1, VIM6 ORTHRUS-like 0.03 OrthoFinder output from all 47 species
Adi_g085234 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.03 OrthoFinder output from all 47 species
Ala_g16034 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.03 OrthoFinder output from all 47 species
Aob_g04282 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.03 OrthoFinder output from all 47 species
Azfi_s0170.g055617 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.03 OrthoFinder output from all 47 species
Azfi_s0286.g063154 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.02 OrthoFinder output from all 47 species
Ceric.01G130300.1 VIM1, ORTH2,... regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.02 OrthoFinder output from all 47 species
Ceric.02G085800.1 VIM1, ORTH2,... regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001024.15 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre03.g163850 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_19211 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Len_g03522 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.02 OrthoFinder output from all 47 species
Nbi_g03787 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.04 OrthoFinder output from all 47 species
Sam_g40416 No alias regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.05 OrthoFinder output from all 47 species
Smo109372 VIM1, ORTH2 E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Spa_g11254 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.02 OrthoFinder output from all 47 species
Tin_g09471 VIM1, ORTH2 regulatory E3 ubiquiTin ligase (ORTH/VIM) of... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 12 58
IPR003105 SRA_YDG 283 432
IPR027370 Znf-RING_euk 530 560
No external refs found!