Zm00001e042169_P001 (RPOC2, Zm00001e042169)

Aliases : RPOC2, Zm00001e042169

Description : RpoC2 core component plastid-encoded RNA polymerase

Gene families : OG0004582 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004582_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e042169_P001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00390p00012910	RPOC2,...	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
ATCG00170	RPOC2	DNA-directed RNA polymerase family protein	0.03	OrthoFinder output from all 47 species
Adi_g117082	RPOC2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g15088	RPOC2	core component *(RpoC2) of plastid-encoded RNA...	0.03	OrthoFinder output from all 47 species
LOC_Os04g16830.1	RPOC2, LOC_Os04g16830	DNA-directed RNA polymerase subunit beta OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Solyc00g500290.1.1	RPOC2, Solyc00g500290	RpoC2 core component plastid-encoded RNA polymerase	0.03	OrthoFinder output from all 47 species
Solyc01g056840.1.1	RPOC2, Solyc01g056840	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e042060_P001	RPOC2, Zm00001e042060	RpoC2 core component plastid-encoded RNA polymerase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0017004	cytochrome complex assembly	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007081	RNA_pol_Rpb1_5	1329	1417
IPR007081	RNA_pol_Rpb1_5	172	369
IPR007083	RNA_pol_Rpb1_4	95	157

External Links

No external refs found!

Zm00001e042169_P001 (RPOC2, Zm00001e042169)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation