Aliases : RPOC2, Zm00001e042060
Description : RpoC2 core component plastid-encoded RNA polymerase
Gene families : OG0004582 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004582_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
ATCG00170 | RPOC2 | DNA-directed RNA polymerase family protein | 0.03 | OrthoFinder output from all 47 species | |
Aev_g15088 | RPOC2 | core component *(RpoC2) of plastid-encoded RNA... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.02G016600.1 | RPOC2, Ceric.02G016600 | core component *(RpoC2) of plastid-encoded RNA... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.06G046000.1 | RPOC2, Ceric.06G046000 | not classified & original description: pacid=50620845... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.29G004900.1 | RPOC2, Ceric.29G004900 | core component *(RpoC2) of plastid-encoded RNA... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.32G060700.1 | RPOC2, Ceric.32G060700 | not classified & original description: pacid=50597350... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.38G010200.1 | RPOC2, Ceric.38G010200 | not classified & original description: pacid=50579905... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os04g16830.1 | RPOC2, LOC_Os04g16830 | DNA-directed RNA polymerase subunit beta OS=Oryza sativa... | 0.06 | OrthoFinder output from all 47 species | |
Solyc00g500290.1.1 | RPOC2, Solyc00g500290 | RpoC2 core component plastid-encoded RNA polymerase | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e042169_P001 | RPOC2, Zm00001e042169 | RpoC2 core component plastid-encoded RNA polymerase | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
BP | GO:0006351 | DNA-templated transcription | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005840 | ribosome | IEP | HCCA |
BP | GO:0006412 | translation | IEP | HCCA |
BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
BP | GO:0043603 | amide metabolic process | IEP | HCCA |
BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007081 | RNA_pol_Rpb1_5 | 148 | 236 |
No external refs found! |