LOC_Os04g27400 (Os04g0341800)


Aliases : Os04g0341800

Description : 16.1.5 secondary metabolism.isoprenoids.terpenoids In the Col ecotype, no functional protein is encoded at this locus due to the presence of a two-base (AT) insertion 184 nucleotides downstream of the start codon leading to a frame shift and premature translational termination. However, in the Ws ecotype, a functional terpene synthase that localizes to the chloroplast is encoded at this locus. It can catalyze the synthesis of (E)-beta-ocimene and (E,E)-alpha farnesene in vitro, but, it has more activity as an (E)-beta-ocimene synthase activity in vivo. This may reflect the greater availability of the GPP precursor of (E)-beta-ocimene than of the FPP precursor of (E,E)-alpha-farnesene in the chloroplasts where the Ws TPS02 is present.


Gene families : OG_01_0000052 (Gene family) Phylogenetic Tree(s): OG0000052_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os04g27400
Cluster HCCA cluster: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01036313001 No alias 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.02 Gene family
LOC_Os03g24690 Os03g0361700,... 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.03 Gene family
LOC_Os04g27540 Os04g0342800 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.05 Gene family
LOC_Os04g27670 Os04g0344100 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.02 Gene family
LOC_Os05g24500 No alias 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.02 Gene family
LOC_Os08g04500 Os08g0139700 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.02 Gene family
Solyc07g052120.3.1 Solyc07g052120.3 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.02 Gene family
Zm00001d024207 No alias 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.03 Gene family
Zm00001d024211 GRMZM2G028306 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.02 Gene family
Zm00001d024477 GRMZM2G465812 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA InterProScan
MF GO:0010333 terpene synthase activity IEA InterProScan
MF GO:0016829 lyase activity IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001906 Terpene_synth_N 2 154
IPR005630 Terpene_synthase_metal-bd 185 451
No external refs found!