Zm00001e041866_P001 (MP, IAA24, ARF5,...)

Aliases : MP, IAA24, ARF5, Zm00001e041866

Description : transcription factor (ARF)

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e041866_P001

Target	Alias	Description	ECC score	Gene Family Method
AT2G33860	ARF3, ETT	Transcriptional factor B3 family protein /...	0.02	OrthoFinder output from all 47 species
Adi_g118366	ARF1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g14726	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g12700	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0007.g010679	ARF1	ARF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Azfi_s0038.g026103	ARF6	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Azfi_s0384.g067487	ARF8, ATARF8	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Azfi_s0390.g067670	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Cba_g04069	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g11871	TIR5, MSG1,...	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g78264	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g14369	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g08602	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g09257	ARF19, IAA22, ARF11	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01008639001	HSS, ARF1-BP, ARF2, ORE14	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
GSVIVT01016266001	ARF16	Auxin response factor 18 OS=Oryza sativa subsp. japonica	0.03	OrthoFinder output from all 47 species
GSVIVT01023149001	ARF1	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01035204001	ARF8, ATARF8	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
GSVIVT01035205001	ARF8, ATARF8	Auxin response factor 12 OS=Oryza sativa subsp. japonica	0.04	OrthoFinder output from all 47 species
GSVIVT01037136001	ARF1	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
LOC_Os01g48060.1	ARF3, ETT, LOC_Os01g48060	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
LOC_Os04g36054.1	ARF1, LOC_Os04g36054	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os05g43920.1	ARF3, ETT, LOC_Os05g43920	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
LOC_Os06g46410.1	ARF6, LOC_Os06g46410	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Len_g08347	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g20412	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g05750	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g07072	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_98506g0010	ARF16	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Mp1g12750.1	ARF6	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Pir_g08351	ARF16	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g17376	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012712	ARF6	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Sam_g50796	No alias	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g096070.3.1	ARF9, Solyc01g096070	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Solyc03g031970.4.1	ARF8, ATARF8,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Solyc04g081240.2.1	MP, IAA24, ARF5,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Spa_g49441	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g55449	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e003229_P002	ARF6, Zm00001e003229	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e006577_P003	ARF8, ATARF8,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e008040_P002	ARF1, Zm00001e008040	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Zm00001e018126_P002	ARF6, Zm00001e018126	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e021527_P006	HSS, ARF1-BP,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	144	245
IPR033389	AUX/IAA_dom	840	930
IPR010525	ARF_dom	270	352

External Links

No external refs found!

Zm00001e041866_P001 (MP, IAA24, ARF5,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation