Zm00001e041546_P002 (TOZ, Zm00001e041546)

Aliases : TOZ, Zm00001e041546

Description : SSU processome assembly factor (TOZ)

Gene families : OG0004926 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004926_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e041546_P002
Cluster	HCCA: Cluster_71

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00048p00053570	TOZ,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	OrthoFinder output from all 47 species
AT5G16750	TOZ	Transducin family protein / WD-40 repeat family protein	0.17	OrthoFinder output from all 47 species
Adi_g055233	TOZ	SSU processome assembly factor *(TOZ) & original...	0.04	OrthoFinder output from all 47 species
Aev_g17444	TOZ	SSU processome assembly factor *(TOZ) & original...	0.03	OrthoFinder output from all 47 species
Aop_g31879	TOZ	SSU processome assembly factor *(TOZ) & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0068.g036365	TOZ	SSU processome assembly factor *(TOZ) & original...	0.06	OrthoFinder output from all 47 species
Cba_g20247	TOZ	SSU processome assembly factor *(TOZ) & original...	0.02	OrthoFinder output from all 47 species
Ceric.15G036100.1	TOZ, Ceric.15G036100	SSU processome assembly factor *(TOZ) & original...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000704.60	No alias	No description available	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000704.61	MSI1, MEE70, ATMSI1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000704.62	No alias	No description available	0.02	OrthoFinder output from all 47 species
Cre07.g344050	TOZ	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	OrthoFinder output from all 47 species
Dcu_g01937	TOZ	SSU processome assembly factor *(TOZ) & original...	0.04	OrthoFinder output from all 47 species
GSVIVT01024351001	TOZ	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	OrthoFinder output from all 47 species
Gb_13772	TOZ	SSU processome assembly factor (TOZ)	0.07	OrthoFinder output from all 47 species
LOC_Os04g50660.1	TOZ, LOC_Os04g50660	SSU processome assembly factor (TOZ)	0.17	OrthoFinder output from all 47 species
MA_10601g0010	TOZ	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
MA_10601g0020	TOZ	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_566936g0010	TOZ	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp8g08070.1	TOZ	SSU processome assembly factor (TOZ)	0.05	OrthoFinder output from all 47 species
Msp_g13701	TOZ	SSU processome assembly factor *(TOZ) & original...	0.04	OrthoFinder output from all 47 species
Ore_g36827	TOZ	SSU processome assembly factor *(TOZ) & original...	0.03	OrthoFinder output from all 47 species
Ppi_g32102	TOZ	SSU processome assembly factor *(TOZ) & original...	0.02	OrthoFinder output from all 47 species
Sam_g14264	No alias	SSU processome assembly factor *(TOZ) & original...	0.03	OrthoFinder output from all 47 species
Smo80645	TOZ	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Solyc03g097160.4.1	TOZ, Solyc03g097160	SSU processome assembly factor (TOZ)	0.16	OrthoFinder output from all 47 species
Spa_g12532	TOZ	SSU processome assembly factor *(TOZ) & original...	0.02	OrthoFinder output from all 47 species
Tin_g15654	TOZ	SSU processome assembly factor *(TOZ) & original...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0004018	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006188	IMP biosynthetic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	HCCA
MF	GO:0016842	amidine-lyase activity	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0046040	IMP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0106413	dihydrouridine synthase activity	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013934	Utp13_C	680	813
IPR001680	WD40_repeat	397	437
IPR001680	WD40_repeat	501	532
IPR001680	WD40_repeat	443	479
IPR001680	WD40_repeat	578	615
IPR001680	WD40_repeat	106	143
IPR001680	WD40_repeat	541	574
IPR001680	WD40_repeat	75	101
IPR001680	WD40_repeat	192	229
IPR001680	WD40_repeat	149	187

External Links

No external refs found!

Zm00001e041546_P002 (TOZ, Zm00001e041546)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation