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  5. Zm00001e041397_P001

Zm00001e041397_P001 (PUB23, Zm00001e041397)


Aliases : PUB23, Zm00001e041397

Description : E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana (sp|q84tg3|pub23_arath : 201.0)


Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e041397_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00199950 evm_27.TU.AmTr_v1... U-box domain-containing protein 31 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
AMTR_s00017p00257160 PUB26,... U-box domain-containing protein 25 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00030p00130440 CMPG2, ATCMPG2,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AMTR_s00043p00215340 PUB8, B80,... U-box domain-containing protein 8 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00138p00053700 evm_27.TU.AmTr_v1... U-box domain-containing protein 21 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT3G02840 No alias ARM repeat superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G11840 PUB24 plant U-box 24 0.04 OrthoFinder output from all 47 species
AT3G18710 PUB29, ATPUB29 plant U-box 29 0.02 OrthoFinder output from all 47 species
AT3G52450 PUB22 plant U-box 22 0.05 OrthoFinder output from all 47 species
Adi_g003285 PUB25 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g077173 PUB25 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g077174 PUB25 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g02974 PUB23 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g09134 PUB25 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g15461 CMPG2, ATCMPG2 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20058 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02187 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05204 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06990 PUB23 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07906 PUB26 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11423 PUB15 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g12715 PUB25 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g23643 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30969 PUB25 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32770 PUB15 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g37093 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g52007 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61569 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g62359 PUB26 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01235 PUB26 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04774 PUB25 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene07828.t1 PUB26, Aspi01Gene07828 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene12032.t1 PUB25, Aspi01Gene12032 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18444.t1 PUB23, Aspi01Gene18444 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18467.t1 PUB23, Aspi01Gene18467 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19337.t2 PUB26, Aspi01Gene19337 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene19374.t1 Aspi01Gene19374 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33499.t1 PUB25, Aspi01Gene33499 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene35689.t1 PUB25, Aspi01Gene35689 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43214.t1 PUB24, Aspi01Gene43214 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene51615.t1 PUB15, Aspi01Gene51615 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51624.t1 PUB15, Aspi01Gene51624 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene51625.t1 PUB15, Aspi01Gene51625 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene51626.t1 PUB15, Aspi01Gene51626 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g56659 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.08G030400.1 PUB26, Ceric.08G030400 U-Box-group-III E3 ubiquitin ligase & original... 0.02 OrthoFinder output from all 47 species
Ceric.08G065500.1 PUB26, Ceric.08G065500 U-Box-group-III E3 ubiquitin ligase & original... 0.06 OrthoFinder output from all 47 species
Ceric.10G007700.1 PUB23, Ceric.10G007700 not classified & original description: pacid=50612519... 0.03 OrthoFinder output from all 47 species
Ceric.19G059800.1 PUB26, Ceric.19G059800 not classified & original description: pacid=50575490... 0.03 OrthoFinder output from all 47 species
Ceric.1Z056500.1 PUB26, Ceric.1Z056500 U-Box-group-III E3 ubiquitin ligase & original... 0.02 OrthoFinder output from all 47 species
Ceric.21G081600.1 PUB26, Ceric.21G081600 U-Box-group-III E3 ubiquitin ligase & original... 0.04 OrthoFinder output from all 47 species
Ceric.25G045400.1 Ceric.25G045400 not classified & original description: pacid=50593359... 0.04 OrthoFinder output from all 47 species
Dcu_g04484 PUB25 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07421 PUB23 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g18955 PUB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g22421 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26825 PUB26 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g31575 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g46168 PUB23 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g01464 PUB26 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24916 PUB25 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g39747 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03660 PUB23 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11880 CMPG1, ATCMPG1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14998 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g16036 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01026542001 CMPG2, ATCMPG2 U-box domain-containing protein 27 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_02490 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_02633 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_11650 PUB26 U-box domain-containing protein 26 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_19502 PUB23 U-box domain-containing protein 25 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_27794 No alias U-box domain-containing protein 21 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os01g57735.1 LOC_Os01g57735 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os02g46500.1 PUB23, LOC_Os02g46500 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os02g50460.1 LOC_Os02g50460 U-box domain-containing protein 20 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os03g13740.1 LOC_Os03g13740 U-box domain-containing protein 20 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os04g34140.1 PUB29, ATPUB29,... E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
LOC_Os04g58920.1 PUB23, LOC_Os04g58920 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os06g13870.1 LOC_Os06g13870 U-box domain-containing protein 21 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
LOC_Os10g03440.1 LOC_Os10g03440 U-box domain-containing protein 20 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
LOC_Os12g06410.1 PUB24, LOC_Os12g06410 E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Len_g09678 PUB25 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g16219 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g31416 PUB23 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g24284 PUB25 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10433846g0010 PUB23 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_126399g0010 PUB26 U-box domain-containing protein 25 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_9494855g0010 PUB26 U-box domain-containing protein 25 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g47390 PUB25 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g01051 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06628 PUB25 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g08919 PUB25 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g21647 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g29544 PUB23 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36530 PUB23 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05122 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11257 PUB26 E3 ubiquitin ligase & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g34239 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g00718 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g12004 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19356 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g27483 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04485 PUB26 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32476 PUB25 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g42738 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002717 PUB26 not classified & original description: CDS=1-1404 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0110.g020660 No alias not classified & original description: CDS=1-1503 0.06 OrthoFinder output from all 47 species
Smo104879 PUB25 U-box domain-containing protein 25 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Smo172230 No alias U-box domain-containing protein 14 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Smo231257 PUB26 U-box domain-containing protein 26 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc01g005160.4.1 Solyc01g005160 U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc01g007050.3.1 PUB24, Solyc01g007050 E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc01g009320.2.1 PUB23, Solyc01g009320 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc04g008100.3.1 Solyc04g008100 U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc06g074140.1.1 PUB24, Solyc06g074140 E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc11g005700.1.1 CMPG2, ATCMPG2,... E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
Solyc11g006030.1.1 Solyc11g006030 U-box domain-containing protein 21 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc11g068940.1.1 PUB24, Solyc11g068940 E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g00706 PUB23 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g09127 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47017 PUB23 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g15093 PUB26 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000999_P001 Zm00001e000999 U-box domain-containing protein 20 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e015491_P001 PUB23, Zm00001e015491 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e015763_P001 Zm00001e015763 U-box domain-containing protein 21 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Zm00001e019173_P001 PUB23, Zm00001e019173 E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Zm00001e022698_P001 PUB26, Zm00001e022698 U-box domain-containing protein 25 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 7 76
No external refs found!