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  5. Zm00001e041372_P001

Zm00001e041372_P001 (NGA1, Zm00001e041372)


Aliases : NGA1, Zm00001e041372

Description : transcription factor (RAV/NGATHA)


Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e041372_P001
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00108490 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
AMTR_s00047p00199500 EDF4, RAV1,... No description available 0.05 OrthoFinder output from all 47 species
AT1G50680 No alias AP2/B3 transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT1G68840 EDF2, AtRAV2,... related to ABI3/VP1 2 0.03 OrthoFinder output from all 47 species
AT2G36080 No alias AP2/B3-like transcriptional factor family protein 0.06 OrthoFinder output from all 47 species
AT3G25730 EDF3 ethylene response DNA binding factor 3 0.02 OrthoFinder output from all 47 species
AT3G61970 NGA2 AP2/B3-like transcriptional factor family protein 0.03 OrthoFinder output from all 47 species
Ala_g04649 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28731.t1 TEM1, EDF1,... AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Cba_g71540 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Dac_g39956 TEM1, EDF1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Dde_g48458 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01011947001 EDF2, AtRAV2,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
GSVIVT01019699001 NGA1 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01023582001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
GSVIVT01036447001 EDF4, RAV1 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.05 OrthoFinder output from all 47 species
LOC_Os06g01860.1 LOC_Os06g01860 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
LOC_Os08g06120.1 NGA1, LOC_Os08g06120 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
LOC_Os11g05740.1 LOC_Os11g05740 transcription factor (RAV/NGATHA) 0.05 OrthoFinder output from all 47 species
MA_10436315g0010 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
MA_246350g0010 EDF4, RAV1 transcription factor (RAV/NGATHA) 0.07 OrthoFinder output from all 47 species
MA_3834g0010 EDF2, AtRAV2,... transcription factor (RAV/NGATHA) 0.08 OrthoFinder output from all 47 species
MA_865117g0010 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
Pir_g49278 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011516 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Solyc05g004000.1.1 NGA1, Solyc05g004000 transcription factor (RAV/NGATHA) 0.04 OrthoFinder output from all 47 species
Solyc05g009790.1.1 EDF4, RAV1,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
Solyc08g013690.1.1 NGA3, Solyc08g013690 transcription factor (RAV/NGATHA) 0.04 OrthoFinder output from all 47 species
Solyc10g083210.2.1 Solyc10g083210 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
Zm00001e002215_P001 NGA3, Zm00001e002215 transcription factor (RAV/NGATHA) 0.05 OrthoFinder output from all 47 species
Zm00001e028111_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
Zm00001e032325_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
Zm00001e039393_P002 Zm00001e039393 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 87 191
No external refs found!