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  5. Zm00001e041206_P001

Zm00001e041206_P001 (Zm00001e041206)


Aliases : Zm00001e041206

Description : E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana (sp|q9lta6|wav3_arath : 186.0)


Gene families : OG0000599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e041206_P001
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00148p00068590 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT1G08050 No alias Zinc finger (C3HC4-type RING finger) family protein 0.04 OrthoFinder output from all 47 species
AT5G49665 No alias Zinc finger (C3HC4-type RING finger) family protein 0.03 OrthoFinder output from all 47 species
Als_g30427 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000605.6 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000802.25 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01016259001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os03g04890.1 LOC_Os03g04890 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os04g42980.1 LOC_Os04g42980 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os08g03270.1 LOC_Os08g03270 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_11225g0010 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g15586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20735 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005076 No alias not classified & original description: CDS=439-2763 0.02 OrthoFinder output from all 47 species
Sam_g38497 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g52375 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc05g056140.4.1 Solyc05g056140 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g14433 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015127_P001 Zm00001e015127 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e023647_P001 Zm00001e023647 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
InterPro domains Description Start Stop
IPR002035 VWF_A 261 440
IPR032838 Vwaint_dom 605 677
IPR001841 Znf_RING 81 110
No external refs found!