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  5. Zm00001e040924_P001

Zm00001e040924_P001 (Zm00001e040924)


Aliases : Zm00001e040924

Description : Putative pentatricopeptide repeat-containing protein At5g08490 OS=Arabidopsis thaliana (sp|q9fnn9|pp370_arath : 618.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e040924_P001
Cluster HCCA: Cluster_515

Target Alias Description ECC score Gene Family Method Actions
Adi_g004345 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g007512 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g007789 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g023974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034364 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034832 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g048224 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067209 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067932 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g098110 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03728 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04477 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16090 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16270 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18510 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26680 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Aob_g37107 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01906.t1 Aspi01Gene01906 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene14876.t1 OTP80, Aspi01Gene14876 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene65851.t1 Aspi01Gene65851 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22994 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g36746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03331 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12874 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g53095 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003168 CRR22 not classified & original description: CDS=1-2031 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0321.g027231 No alias substrate adaptor of SCF E3 ubiquitin ligase complex &... 0.02 OrthoFinder output from all 47 species
Tin_g19925 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 111 133
IPR002885 Pentatricopeptide_repeat 583 612
IPR002885 Pentatricopeptide_repeat 554 580
IPR002885 Pentatricopeptide_repeat 135 187
IPR002885 Pentatricopeptide_repeat 679 727
IPR002885 Pentatricopeptide_repeat 242 286
IPR002885 Pentatricopeptide_repeat 345 392
No external refs found!