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  5. Zm00001e040293_P001

Zm00001e040293_P001 (Zm00001e040293)


Aliases : Zm00001e040293

Description : RNA editing factor (MORF)


Gene families : OG0008097 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e040293_P001
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00179200 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AT1G11430 No alias plastid developmental protein DAG, putative 0.15 OrthoFinder output from all 47 species
GSVIVT01014547001 No alias RNA processing.organelle machineries.RNA... 0.07 OrthoFinder output from all 47 species
GSVIVT01027872001 No alias RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
GSVIVT01028387001 No alias RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
Gb_32072 No alias RNA editing factor (MORF) 0.03 OrthoFinder output from all 47 species
Gb_40528 No alias RNA editing factor (MORF) 0.03 OrthoFinder output from all 47 species
LOC_Os04g51280.1 LOC_Os04g51280 RNA editing factor (MORF) 0.1 OrthoFinder output from all 47 species
LOC_Os11g11020.1 LOC_Os11g11020 RNA editing factor (MORF) 0.04 OrthoFinder output from all 47 species
MA_123833g0010 No alias RNA editing factor (MORF) 0.02 OrthoFinder output from all 47 species
MA_5791g0010 No alias RNA editing factor (MORF) 0.03 OrthoFinder output from all 47 species
Solyc02g079770.3.1 Solyc02g079770 RNA editing factor (MORF) 0.09 OrthoFinder output from all 47 species
Solyc05g054960.4.1 Solyc05g054960 RNA editing factor (MORF) 0.02 OrthoFinder output from all 47 species
Solyc06g008220.4.1 Solyc06g008220 RNA editing factor (MORF) 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!