Zm00001e040236_P001 (RNA_POL_II_LSRNA_POL_I...)

Aliases : RNA_POL_II_LSRNA_POL_II_LS, NRPB1, RPB1, RNA_POL_II_LS, Zm00001e040236

Description : subunit 1 of Pol II RNA polymerase

Gene families : OG0003577 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003577_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e040236_P001
Cluster	HCCA: Cluster_137

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00152770	RNA_POL_II_LSRNA_...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	OrthoFinder output from all 47 species
AT4G35800	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.08	OrthoFinder output from all 47 species
Ceric.19G033900.1	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.05	OrthoFinder output from all 47 species
Dcu_g02060	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Gb_33197	RNA_POL_II_LSRNA_...	subunit 1 of Pol II RNA polymerase	0.02	OrthoFinder output from all 47 species
MA_5690g0010	RNA_POL_II_LSRNA_...	subunit 1 of Pol II RNA polymerase	0.03	OrthoFinder output from all 47 species
Nbi_g12702	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.04	OrthoFinder output from all 47 species
Sam_g30215	No alias	component *(NRPB1) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Solyc02g083350.4.1	RNA_POL_II_LSRNA_...	DNA-directed RNA polymerase II subunit 1 OS=Arabidopsis...	0.1	OrthoFinder output from all 47 species
Spa_g08443	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006366	transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006396	RNA processing	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007080	RNA_pol_Rpb1_1	14	349
IPR007083	RNA_pol_Rpb1_4	714	817
IPR007066	RNA_pol_Rpb1_3	523	686
IPR007073	RNA_pol_Rpb1_7	1159	1293
IPR000722	RNA_pol_asu	351	519
IPR007075	RNA_pol_Rpb1_6	890	1074
IPR007081	RNA_pol_Rpb1_5	824	1414
IPR000684	RNA_pol_II_repeat_euk	1677	1690
IPR000684	RNA_pol_II_repeat_euk	1607	1620
IPR000684	RNA_pol_II_repeat_euk	1649	1662
IPR000684	RNA_pol_II_repeat_euk	1698	1711
IPR000684	RNA_pol_II_repeat_euk	1733	1746
IPR000684	RNA_pol_II_repeat_euk	1814	1823
IPR000684	RNA_pol_II_repeat_euk	1777	1790
IPR000684	RNA_pol_II_repeat_euk	1579	1592
IPR000684	RNA_pol_II_repeat_euk	1635	1648
IPR000684	RNA_pol_II_repeat_euk	1670	1683
IPR000684	RNA_pol_II_repeat_euk	1656	1669
IPR000684	RNA_pol_II_repeat_euk	1684	1697
IPR000684	RNA_pol_II_repeat_euk	1593	1606
IPR000684	RNA_pol_II_repeat_euk	1691	1704
IPR000684	RNA_pol_II_repeat_euk	1726	1739
IPR000684	RNA_pol_II_repeat_euk	1705	1718
IPR000684	RNA_pol_II_repeat_euk	1719	1732
IPR000684	RNA_pol_II_repeat_euk	1772	1783
IPR000684	RNA_pol_II_repeat_euk	1740	1753
IPR000684	RNA_pol_II_repeat_euk	1712	1725
IPR000684	RNA_pol_II_repeat_euk	1621	1634
IPR000684	RNA_pol_II_repeat_euk	1663	1676

External Links

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Zm00001e040236_P001 (RNA_POL_II_LSRNA_POL_I...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation