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Aliases : LHY1, LHY, Zm00001e040217
Description : circadian clock core oscillator protein (LHY|CCA1)
Gene families : OG0000435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000435_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e040217_P001 | |
| Cluster | HCCA: Cluster_24 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00001p00272270 | LHY1, LHY,... | Multi-process regulation.circadian clock.core oscillator... | 0.02 | OrthoFinder output from all 47 species | |
| AT1G01060 | LHY1, LHY | Homeodomain-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT2G46830 | CCA1 | circadian clock associated 1 | 0.03 | OrthoFinder output from all 47 species | |
| AT3G09600 | No alias | Homeodomain-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT5G17300 | RVE1 | Homeodomain-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g12530 | RVE2, CIR1 | circadian clock core oscillator protein *(LHY/CCA1) &... | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g01863 | No alias | circadian clock factor *(REVEILLE) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g32805 | LHY1, LHY | circadian clock core oscillator protein *(LHY/CCA1) &... | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g13615 | RVE2, CIR1 | transcription factor *(REVEILLE) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene01893.t1 | Aspi01Gene01893 | transcription factor *(REVEILLE) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0001.g000277 | No alias | circadian clock factor *(REVEILLE) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0005.g008971 | RVE1 | transcription factor *(REVEILLE) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0042.g026930 | CCA1 | circadian clock core oscillator protein *(LHY/CCA1) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.04G087900.1 | RVE2, CIR1,... | transcription factor *(REVEILLE) & original description:... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.06G032400.1 | RVE2, CIR1,... | transcription factor *(REVEILLE) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g09144 | RVE1 | transcription factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01027456001 | CCA1 | Multi-process regulation.circadian clock.core oscillator... | 0.1 | OrthoFinder output from all 47 species | |
| LOC_Os02g45670.1 | LOC_Os02g45670 | transcription factor (MYB-related). REVEILLE circadian... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os06g01670.1 | LOC_Os06g01670 | transcription factor (MYB-related). REVEILLE circadian... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os06g51260.1 | RVE2, CIR1,... | transcription factor (MYB-related) | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os08g06110.3 | LHY1, LHY, LOC_Os08g06110 | transcription factor (MYB-related). circadian clock core... | 0.05 | OrthoFinder output from all 47 species | |
| Len_g19700 | RVE1 | transcription factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g20787 | No alias | circadian clock factor *(REVEILLE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g19096 | No alias | circadian clock factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g26311 | RVE2, CIR1 | transcription factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g29371 | No alias | circadian clock factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g16347 | RVE2, CIR1 | transcription factor *(REVEILLE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g44663 | No alias | circadian clock factor *(REVEILLE) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g42013 | RVE2, CIR1 | transcription factor *(REVEILLE) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Smo166821 | No alias | Multi-process regulation.circadian clock.core oscillator... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g098320.4.1 | RVE1, Solyc03g098320 | transcription factor (MYB-related) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc10g005080.3.1 | LHY1, LHY, Solyc10g005080 | transcription factor (MYB-related). circadian clock core... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc10g084370.3.1 | Solyc10g084370 | transcription factor (MYB-related). REVEILLE circadian... | 0.06 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003873 | 6-phosphofructo-2-kinase activity | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0005996 | monosaccharide metabolic process | IEP | HCCA |
| BP | GO:0006000 | fructose metabolic process | IEP | HCCA |
| BP | GO:0006644 | phospholipid metabolic process | IEP | HCCA |
| BP | GO:0006650 | glycerophospholipid metabolic process | IEP | HCCA |
| BP | GO:0007165 | signal transduction | IEP | HCCA |
| MF | GO:0008443 | phosphofructokinase activity | IEP | HCCA |
| MF | GO:0016301 | kinase activity | IEP | HCCA |
| MF | GO:0016307 | phosphatidylinositol phosphate kinase activity | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0019200 | carbohydrate kinase activity | IEP | HCCA |
| BP | GO:0019318 | hexose metabolic process | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0044255 | cellular lipid metabolic process | IEP | HCCA |
| BP | GO:0046486 | glycerolipid metabolic process | IEP | HCCA |
| BP | GO:0046488 | phosphatidylinositol metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |