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  5. Zm00001e040095_P002

Zm00001e040095_P002 (Zm00001e040095)


Aliases : Zm00001e040095

Description : Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana (sp|o65567|pp342_arath : 856.0)


Gene families : OG0005967 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005967_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e040095_P002

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
Adi_g016371 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01078 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21865 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene09212.t1 Aspi01Gene09212 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06462 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g20213 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g03993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_06104 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
LOC_Os09g25550.1 LOC_Os09g25550 Pentatricopeptide repeat-containing protein At4g30825,... 0.08 OrthoFinder output from all 47 species
Len_g12313 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012097 No alias not classified & original description: CDS=661-1995 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015623 No alias not classified & original description: CDS=1-2238 0.02 OrthoFinder output from all 47 species
Sam_g13761 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25071 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g23344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006415 translational termination IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 856 913
IPR002885 Pentatricopeptide_repeat 716 775
IPR002885 Pentatricopeptide_repeat 380 426
IPR002885 Pentatricopeptide_repeat 801 842
IPR002885 Pentatricopeptide_repeat 279 308
IPR002885 Pentatricopeptide_repeat 557 583
IPR002885 Pentatricopeptide_repeat 626 652
IPR002885 Pentatricopeptide_repeat 353 377
IPR002885 Pentatricopeptide_repeat 313 341
IPR002885 Pentatricopeptide_repeat 456 482
No external refs found!