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  5. Zm00001e040024_P001

Zm00001e040024_P001 (VEL1, VIL2, Zm00001e040024)


Aliases : VEL1, VIL2, Zm00001e040024

Description : PRC2-VRN-interacting PHD protein (VIN3|VRN5)


Gene families : OG0001143 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001143_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e040024_P001
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
Aev_g19531 VEL1, VIL2 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.03 OrthoFinder output from all 47 species
Ala_g15193 VIL1, VRN5 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.02 OrthoFinder output from all 47 species
Als_g29177 VEL1, VIL2 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.03 OrthoFinder output from all 47 species
Als_g39230 VIN3 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.02 OrthoFinder output from all 47 species
Cba_g76179 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g22153 VEL1, VIL2 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.05 OrthoFinder output from all 47 species
LOC_Os05g05310.2 VIL1, VRN5,... PRC2-VRN-interacting PHD protein (VIN3|VRN5) 0.02 OrthoFinder output from all 47 species
Len_g11565 VEL1, VIL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_55622g0010 VEL1, VIL2 PRC2-VRN-interacting PHD protein (VIN3|VRN5) 0.02 OrthoFinder output from all 47 species
Msp_g15468 VIL1, VRN5 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.02 OrthoFinder output from all 47 species
Nbi_g02340 VEL1, VIL2 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.04 OrthoFinder output from all 47 species
Pir_g06485 VEL1, VIL2 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.03 OrthoFinder output from all 47 species
Solyc04g076400.3.1 VEL1, VIL2,... PRC2-VRN-interacting PHD protein (VIN3|VRN5) 0.04 OrthoFinder output from all 47 species
Spa_g51844 VIL1, VRN5 PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone... 0.02 OrthoFinder output from all 47 species
Tin_g13319 VEL1, VIL2 PRC2-VRN-interacTing factor (VIN3/VEL) of PRC2 histone... 0.03 OrthoFinder output from all 47 species
Zm00001e025209_P001 VEL1, VIL2,... PRC2-VRN-interacting PHD protein (VIN3|VRN5) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006471 obsolete protein ADP-ribosylation IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0036297 interstrand cross-link repair IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043240 Fanconi anaemia nuclear complex IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR032881 Oberon_PHD 128 252
No external refs found!