1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e039313_P003

Zm00001e039313_P003 (Zm00001e039313)


Aliases : Zm00001e039313

Description : EF-P translation elongation factor


Gene families : OG0006339 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006339_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e039313_P003
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AT3G08740 No alias elongation factor P (EF-P) family protein 0.22 OrthoFinder output from all 47 species
Adi_g010197 No alias translation elongation factor *(EF-P) & original... 0.02 OrthoFinder output from all 47 species
Als_g20082 No alias translation elongation factor *(EF-P) & original... 0.02 OrthoFinder output from all 47 species
Aob_g02958 No alias translation elongation factor *(EF-P) & original... 0.06 OrthoFinder output from all 47 species
Aop_g13148 No alias translation elongation factor *(EF-P) & original... 0.07 OrthoFinder output from all 47 species
Aspi01Gene26427.t1 Aspi01Gene26427 translation elongation factor *(EF-P) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene26427.t2 Aspi01Gene26427 translation elongation factor *(EF-P) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0359.g066840 No alias translation elongation factor *(EF-P) & original... 0.1 OrthoFinder output from all 47 species
Ceric.24G041300.1 Ceric.24G041300 translation elongation factor *(EF-P) & original... 0.05 OrthoFinder output from all 47 species
Dcu_g11332 No alias translation elongation factor *(EF-P) & original... 0.03 OrthoFinder output from all 47 species
Dde_g00267 No alias translation elongation factor *(EF-P) & original... 0.05 OrthoFinder output from all 47 species
Ehy_g00568 No alias translation elongation factor *(EF-P) & original... 0.1 OrthoFinder output from all 47 species
GSVIVT01030181001 No alias Protein biosynthesis.organelle translation... 0.14 OrthoFinder output from all 47 species
Gb_23992 No alias EF-P translation elongation factor 0.02 OrthoFinder output from all 47 species
LOC_Os11g02450.1 LOC_Os11g02450 EF-P translation elongation factor 0.19 OrthoFinder output from all 47 species
LOC_Os12g02380.1 LOC_Os12g02380 EF-P translation elongation factor 0.07 OrthoFinder output from all 47 species
Len_g01053 No alias translation elongation factor *(EF-P) & original... 0.05 OrthoFinder output from all 47 species
Lfl_g12882 No alias translation elongation factor *(EF-P) & original... 0.06 OrthoFinder output from all 47 species
MA_10431557g0010 No alias EF-P translation elongation factor 0.04 OrthoFinder output from all 47 species
Mp4g02120.1 No alias EF-P translation elongation factor 0.21 OrthoFinder output from all 47 species
Msp_g01862 No alias translation elongation factor *(EF-P) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g06931 No alias translation elongation factor *(EF-P) & original... 0.08 OrthoFinder output from all 47 species
Ore_g18750 No alias translation elongation factor *(EF-P) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g08895 No alias translation elongation factor *(EF-P) & original... 0.02 OrthoFinder output from all 47 species
Sam_g14867 No alias translation elongation factor *(EF-P) & original... 0.04 OrthoFinder output from all 47 species
Solyc10g075020.3.1 Solyc10g075020 EF-P translation elongation factor 0.21 OrthoFinder output from all 47 species
Spa_g11669 No alias translation elongation factor *(EF-P) & original... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006414 translational elongation IEA Interproscan
BP GO:0043043 peptide biosynthetic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006412 translation IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051920 peroxiredoxin activity IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR015365 Elong-fact-P_C 180 234
IPR001059 Transl_elong_P/YeiP_cen 122 172
IPR013185 Transl_elong_KOW-like 54 110
No external refs found!