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  5. Zm00001e038719_P006

Zm00001e038719_P006 (AFP2, Zm00001e038719)


Aliases : AFP2, Zm00001e038719

Description : transcriptional co-repressor (AFP/NINJA)


Gene families : OG0001010 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001010_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e038719_P006

Target Alias Description ECC score Gene Family Method Actions
Aev_g07969 AFP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g35216 AFP3 transcriptional co-repressor *(AFP/NINJA) & original... 0.03 OrthoFinder output from all 47 species
Ala_g27252 NINJA transcriptional co-repressor *(AFP/NINJA) & original... 0.02 OrthoFinder output from all 47 species
Als_g57739 NINJA not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene37245.t1 NINJA, Aspi01Gene37245 transcriptional co-repressor *(AFP/NINJA) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g01983 AFP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06877 NINJA transcriptional co-repressor *(AFP/NINJA) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01008104001 AFP3 RNA biosynthesis.transcriptional repression.AFP/NINJA... 0.03 OrthoFinder output from all 47 species
Gb_07890 AFP3 transcriptional co-repressor (AFP/NINJA) 0.02 OrthoFinder output from all 47 species
LOC_Os01g68820.1 LOC_Os01g68820 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
MA_2575g0010 AFP3 transcriptional co-repressor (AFP/NINJA) 0.03 OrthoFinder output from all 47 species
Pir_g50193 AFP2 transcriptional co-repressor *(AFP/NINJA) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g32749 NINJA not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s2890.g028487 NINJA transcriptional co-repressor *(AFP/NINJA) & original... 0.03 OrthoFinder output from all 47 species
Spa_g02907 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g31839 AFP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032310 NINJA_B 140 243
IPR012463 Ninja_motif 29 64
IPR032308 TDBD 323 386
No external refs found!