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  5. Zm00001e038627_P004

Zm00001e038627_P004 (APC6, Zm00001e038627)


Aliases : APC6, Zm00001e038627

Description : component APC6 of (APC/C)-dependent ubiquitination arc lamp subcomplex


Gene families : OG0005600 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005600_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e038627_P004
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AT1G78770 APC6 anaphase promoting complex 6 0.02 OrthoFinder output from all 47 species
Ceric.29G072200.1 APC6, Ceric.29G072200 component *(APC6) of (APC/C)-dependent ubiquitination... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021350.35 APC6 Cell cycle.mitosis and meiosis.metaphase to anaphase... 0.02 OrthoFinder output from all 47 species
Cre13.g562950 APC6 Cell cycle.mitosis and meiosis.metaphase to anaphase... 0.03 OrthoFinder output from all 47 species
Dcu_g18732 APC6 component *(APC6) of (APC/C)-dependent ubiquitination... 0.02 OrthoFinder output from all 47 species
Gb_40714 APC6 component APC6 of (APC/C)-dependent ubiquitination arc... 0.01 OrthoFinder output from all 47 species
LOC_Os03g13370.1 APC6, LOC_Os03g13370 component APC6 of (APC/C)-dependent ubiquitination arc... 0.06 OrthoFinder output from all 47 species
MA_18243g0020 APC6 component APC6 of (APC/C)-dependent ubiquitination arc... 0.03 OrthoFinder output from all 47 species
Mp6g17670.1 APC6 component APC6 of (APC/C)-dependent ubiquitination arc... 0.02 OrthoFinder output from all 47 species
Solyc12g014320.2.1 APC6, Solyc12g014320 component APC6 of (APC/C)-dependent ubiquitination arc... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
CC GO:0000796 condensin complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR011716 TPR-3 525 544
IPR011716 TPR-3 454 473
IPR019734 TPR_repeat 488 514
IPR019734 TPR_repeat 168 197
No external refs found!