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Aliases : Zm00001e038611
Description : protein factor NHP2L1/SNU13 of U4/U6 small nuclear ribonucleoprotein particle (snRNP). component Snu13 of snoRNP rRNA methylation complex
Gene families : OG0002183 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002183_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00029p00103630 | evm_27.TU.AmTr_v1... | RNA processing.RNA modification.rRNA/tRNA... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00043p00189790 | evm_27.TU.AmTr_v1... | RNA processing.RNA modification.rRNA/tRNA... | 0.15 | OrthoFinder output from all 47 species | |
| AT4G12600 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.21 | OrthoFinder output from all 47 species | |
| AT4G22380 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.02 | OrthoFinder output from all 47 species | |
| AT5G20160 | No alias | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.21 | OrthoFinder output from all 47 species | |
| Aev_g08774 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g09839 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g25287 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g45351 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g18049 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene59957.t1 | Aspi01Gene59957 | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.06 | OrthoFinder output from all 47 species | |
| Azfi_s0280.g062289 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.07 | OrthoFinder output from all 47 species | |
| Cba_g08843 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g29914 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.03G070800.1 | Ceric.03G070800 | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.08 | OrthoFinder output from all 47 species | |
| Cre06.g249250 | No alias | RNA processing.RNA modification.rRNA/tRNA... | 0.17 | OrthoFinder output from all 47 species | |
| Dac_g02506 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g29609 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g19050 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01015520001 | No alias | RNA processing.RNA modification.rRNA/tRNA... | 0.08 | OrthoFinder output from all 47 species | |
| Gb_01849 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.16 | OrthoFinder output from all 47 species | |
| Gb_14400 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_35231 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os03g13800.1 | LOC_Os03g13800 | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.23 | OrthoFinder output from all 47 species | |
| LOC_Os10g03540.1 | LOC_Os10g03540 | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g21991 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.05 | OrthoFinder output from all 47 species | |
| MA_10201g0010 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.03 | OrthoFinder output from all 47 species | |
| MA_16906g0010 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.12 | OrthoFinder output from all 47 species | |
| MA_433779g0010 | No alias | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.16 | OrthoFinder output from all 47 species | |
| Nbi_g28965 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.06 | OrthoFinder output from all 47 species | |
| Pir_g06572 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g09212 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.05 | OrthoFinder output from all 47 species | |
| Pp3c17_18010V3.1 | Pp3c17_18010 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g08742 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.23 | OrthoFinder output from all 47 species | |
| Sam_g08743 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.15 | OrthoFinder output from all 47 species | |
| Smo159569 | No alias | RNA processing.RNA modification.rRNA/tRNA... | 0.06 | OrthoFinder output from all 47 species | |
| Solyc09g011420.3.1 | Solyc09g011420 | protein factor NHP2L1/SNU13 of U4/U6 small nuclear... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g42722 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g56417 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g17080 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g30682 | No alias | component *(Snu13) of snoRNP rRNA methylation complex &... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004038 | Ribosomal_L7Ae/L30e/S12e/Gad45 | 23 | 110 |
| No external refs found! |