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  5. Zm00001e038469_P001

Zm00001e038469_P001 (PAB7, Zm00001e038469)


Aliases : PAB7, Zm00001e038469

Description : mRNA poly-A-tail binding factor (PABP)


Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e038469_P001
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AT1G22760 PAB3 poly(A) binding protein 3 0.03 OrthoFinder output from all 47 species
Adi_g049370 PAB2, PABP2, ATPAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g20798 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g04141 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g11365 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g01187 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.04 OrthoFinder output from all 47 species
Smo74731 PAB2, PABP2, ATPAB2 Protein biosynthesis.translation initiation.mRNA... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 49 119
IPR000504 RRM_dom 330 398
IPR000504 RRM_dom 137 206
IPR000504 RRM_dom 227 295
IPR002004 PABP_HYD 567 632
No external refs found!