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  5. Zm00001e038256_P001

Zm00001e038256_P001 (Zm00001e038256)


Aliases : Zm00001e038256

Description : C3H zinc finger transcription factor


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e038256_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00021560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
AT3G51950 No alias Zinc finger (CCCH-type) family protein / RNA recognition... 0.1 OrthoFinder output from all 47 species
AT3G63450 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.09 OrthoFinder output from all 47 species
AT5G12440 No alias CCCH-type zinc fingerfamily protein with RNA-binding domain 0.03 OrthoFinder output from all 47 species
Adi_g014190 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g025310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057679 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057680 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g073356 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g125875 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g58788 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0037.g026036 No alias not classified & original description: CDS=1-2112 0.06 OrthoFinder output from all 47 species
Ceric.26G049200.1 Ceric.26G049200 not classified & original description: pacid=50600373... 0.04 OrthoFinder output from all 47 species
Dcu_g39714 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g07818 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01001467001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.04 OrthoFinder output from all 47 species
GSVIVT01031538001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.07 OrthoFinder output from all 47 species
LOC_Os03g21140.1 LOC_Os03g21140 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os03g21160.2 LOC_Os03g21160 C3H zinc finger transcription factor 0.07 OrthoFinder output from all 47 species
LOC_Os07g48410.1 LOC_Os07g48410 C3H zinc finger transcription factor 0.11 OrthoFinder output from all 47 species
LOC_Os11g03220.1 LOC_Os11g03220 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Lfl_g23635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_33942g0010 No alias C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
MA_479847g0010 No alias C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Nbi_g05445 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g22013 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25621 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g13313 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g008600.4.1 Solyc01g008600 C3H zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
Solyc11g065320.2.1 Solyc11g065320 C3H zinc finger transcription factor 0.06 OrthoFinder output from all 47 species
Spa_g27908 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e035876_P001 Zm00001e035876 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 235 255
IPR000504 RRM_dom 380 425
No external refs found!