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  5. Zm00001e038060_P001

Zm00001e038060_P001 (PGR3, Zm00001e038060)


Aliases : PGR3, Zm00001e038060

Description : Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana (sp|q9sz52|pp344_arath : 1095.0)


Gene families : OG0014487 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0014487_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e038060_P001
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00039970 PGR3,... Pentatricopeptide repeat-containing protein At4g31850,... 0.02 OrthoFinder output from all 47 species
AT4G31850 PGR3 proton gradient regulation 3 0.04 OrthoFinder output from all 47 species
GSVIVT01035975001 PGR3 Pentatricopeptide repeat-containing protein At4g31850,... 0.04 OrthoFinder output from all 47 species
Gb_22719 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.02 OrthoFinder output from all 47 species
Gb_22724 PGR3 Pentatricopeptide repeat-containing protein At4g31850,... 0.02 OrthoFinder output from all 47 species
LOC_Os10g28600.1 PGR3, LOC_Os10g28600 Pentatricopeptide repeat-containing protein At4g31850,... 0.03 OrthoFinder output from all 47 species
MA_131302g0010 PGR3 Pentatricopeptide repeat-containing protein At4g31850,... 0.02 OrthoFinder output from all 47 species
Solyc04g015440.4.1 PGR3, Solyc04g015440 Pentatricopeptide repeat-containing protein At4g31850,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006772 thiamine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009228 thiamine biosynthetic process IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034309 primary alcohol biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0042724 thiamine-containing compound biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 737 762
IPR002885 Pentatricopeptide_repeat 422 447
IPR033443 PPR_long 189 332
IPR002885 Pentatricopeptide_repeat 345 393
IPR002885 Pentatricopeptide_repeat 449 497
IPR002885 Pentatricopeptide_repeat 1044 1084
IPR002885 Pentatricopeptide_repeat 837 883
IPR002885 Pentatricopeptide_repeat 589 637
IPR002885 Pentatricopeptide_repeat 908 953
IPR002885 Pentatricopeptide_repeat 767 811
IPR002885 Pentatricopeptide_repeat 974 1018
IPR002885 Pentatricopeptide_repeat 519 567
No external refs found!