LOC_Os04g16830


Description : 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2


Gene families : OG_01_0001467 (Gene family) Phylogenetic Tree(s): OG0001467_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os04g16830
Cluster HCCA cluster: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
ATCG00170 RPOC2 DNA-directed RNA polymerase family protein 0.17 Gene family
GSVIVT01017094001 No alias 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.05 Gene family
GSVIVT01019173001 No alias 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.04 Gene family
GSVIVT01032753001 No alias 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.03 Gene family
Solyc01g017510.1.1 Solyc01g017510.1 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.04 Gene family
Solyc05g020010.1.1 Solyc05g020010.1 1.1.2.2 PS.lightreaction.photosystem I.PSI polypeptide... 0.02 Gene family
Solyc06g074600.1.1 Solyc06g074600.1 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.05 Gene family
Solyc08g028910.1.1 Solyc08g028910.1 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.05 Gene family
Solyc08g028920.2.1 Solyc08g028920.2 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.02 Gene family
Solyc12g096910.1.1 Solyc12g096910.1 27.2 RNA.transcription RNA polymerase beta' subunit-2 RPOC2 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan
BP GO:0006351 transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 138 196
IPR000722 RNA_pol_asu 41 65
No external refs found!