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  5. Zm00001e037539_P001

Zm00001e037539_P001 (TSBtype2, Zm00001e037539)


Aliases : TSBtype2, Zm00001e037539

Description : Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana (sp|p14671|trpb1_arath : 100.0)


Gene families : OG0004509 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004509_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e037539_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00265000 TSBtype2,... Tryptophan synthase beta chain 2, chloroplastic... 0.02 OrthoFinder output from all 47 species
AT5G38530 TSBtype2 tryptophan synthase beta type 2 0.06 OrthoFinder output from all 47 species
Adi_g012187 TSBtype2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g14953 TSBtype2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g14711 TSBtype2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g04734 TSBtype2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_06259 TSBtype2 Uncharacterized aarF domain-containing protein kinase... 0.02 OrthoFinder output from all 47 species
Gb_36200 TSBtype2 Uncharacterized aarF domain-containing protein kinase... 0.02 OrthoFinder output from all 47 species
LOC_Os06g42560.4 TSBtype2, LOC_Os06g42560 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pir_g18665 TSBtype2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g13213 TSBtype2 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
InterPro domains Description Start Stop
IPR001926 TrpB-like_PALP 3 336
No external refs found!