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  5. Zm00001e037442_P001

Zm00001e037442_P001 (CLO, GFA1, MEE5,...)


Aliases : CLO, GFA1, MEE5, Zm00001e037442

Description : protein factor SNU114/U5-116kDa of U5 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0005717 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005717_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e037442_P001
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00245240 CLO, GFA1, MEE5,... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
AT1G06220 CLO, GFA1, MEE5 Ribosomal protein S5/Elongation factor G/III/V family protein 0.08 OrthoFinder output from all 47 species
Adi_g088502 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.02 OrthoFinder output from all 47 species
Ala_g13456 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.03 OrthoFinder output from all 47 species
Als_g01183 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.05 OrthoFinder output from all 47 species
Aop_g09606 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.05 OrthoFinder output from all 47 species
Azfi_s0006.g009737 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.02 OrthoFinder output from all 47 species
Cba_g02713 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.02 OrthoFinder output from all 47 species
Ceric.11G055700.1 CLO, GFA1, MEE5,... component *(CLO/SNU114/MAC11) of MAC... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020904.68 CLO, GFA1, MEE5 110 kDa U5 small nuclear ribonucleoprotein component CLO... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020904.69 CLO, GFA1, MEE5 RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Cre17.g737250 CLO, GFA1, MEE5 RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Dcu_g06490 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.06 OrthoFinder output from all 47 species
GSVIVT01012881001 CLO, GFA1, MEE5 RNA processing.RNA splicing.U2-type-intron-specific... 0.09 OrthoFinder output from all 47 species
Gb_08962 CLO, GFA1, MEE5 protein factor SNU114/U5-116kDa of U5 small nuclear... 0.05 OrthoFinder output from all 47 species
LOC_Os06g40600.1 CLO, GFA1, MEE5,... protein factor SNU114/U5-116kDa of U5 small nuclear... 0.09 OrthoFinder output from all 47 species
Lfl_g07092 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.03 OrthoFinder output from all 47 species
MA_931263g0010 CLO, GFA1, MEE5 protein factor SNU114/U5-116kDa of U5 small nuclear... 0.09 OrthoFinder output from all 47 species
Mp8g11140.1 CLO, GFA1, MEE5 protein factor SNU114/U5-116kDa of U5 small nuclear... 0.04 OrthoFinder output from all 47 species
Msp_g13786 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.03 OrthoFinder output from all 47 species
Ore_g15718 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.03 OrthoFinder output from all 47 species
Pnu_g08542 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.02 OrthoFinder output from all 47 species
Sam_g30417 No alias component *(CLO/SNU114/MAC11) of MAC... 0.02 OrthoFinder output from all 47 species
Sam_g30419 No alias component *(CLO/SNU114/MAC11) of MAC... 0.05 OrthoFinder output from all 47 species
Smo231460 CLO, GFA1, MEE5 RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Solyc07g007210.3.1 CLO, GFA1, MEE5,... protein factor SNU114/U5-116kDa of U5 small nuclear... 0.07 OrthoFinder output from all 47 species
Spa_g01974 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.06 OrthoFinder output from all 47 species
Tin_g10992 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP HCCA
CC GO:0000178 exosome (RNase complex) IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR000640 EFG_V-like 848 936
IPR000795 T_Tr_GTP-bd_dom 146 459
IPR005517 Transl_elong_EFG/EF2_IV 731 845
IPR004161 EFTu-like_2 514 588
IPR031950 EFTUD2_N 3 122
No external refs found!