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  5. Zm00001e036760_P001

Zm00001e036760_P001 (Zm00001e036760)


Aliases : Zm00001e036760

Description : transcription factor (BBX-CO)


Gene families : OG0001051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e036760_P001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00156240 CIA2,... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
AT1G07050 No alias CCT motif family protein 0.05 OrthoFinder output from all 47 species
AT5G57180 CIA2 chloroplast import apparatus 2 0.03 OrthoFinder output from all 47 species
Aev_g34755 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene58206.t1 Aspi01Gene58206 CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0172.g055744 No alias not classified & original description: CDS=1-1599 0.02 OrthoFinder output from all 47 species
Cba_g13442 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20220 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01010855001 CIA2 RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
GSVIVT01011897001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
Gb_20872 CIA2 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Lfl_g06124 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16447 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c14_8140V3.1 Pp3c14_8140 B-box type zinc finger protein with CCT domain 0.02 OrthoFinder output from all 47 species
Ppi_g17788 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15685 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g008540.3.1 CIA2, Solyc07g008540 transcription factor (BBX-CO) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 20 63
IPR010402 CCT_domain 401 443
No external refs found!