Zm00001e036060_P001 (PUB39, Zm00001e036060)

Aliases : PUB39, Zm00001e036060

Description : E3 ubiquitin ligase (PUB)

Gene families : OG0004266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004266_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e036060_P001

Target	Alias	Description	ECC score	Gene Family Method
Dcu_g40033	PUB38, ATPUB38	U-Box-group-II E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g03795	PUB39	U-Box-group-II E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g16204	PUB39	U-Box-group-II E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Gb_13006	PUB38, ATPUB38	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
LOC_Os06g13080.1	PUB39, LOC_Os06g13080	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
LOC_Os06g13090.1	PUB39, LOC_Os06g13090	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
LOC_Os09g21740.1	PUB38, ATPUB38,...	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species
MA_252170g0010	PUB38, ATPUB38	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019720	Mo-molybdopterin cofactor metabolic process	IEP	HCCA
BP	GO:0032324	molybdopterin cofactor biosynthetic process	IEP	HCCA
BP	GO:0043545	molybdopterin cofactor metabolic process	IEP	HCCA
BP	GO:0051189	prosthetic group metabolic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	86	159

External Links

No external refs found!