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  5. Zm00001e035876_P001

Zm00001e035876_P001 (Zm00001e035876)


Aliases : Zm00001e035876

Description : C3H zinc finger transcription factor


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e035876_P001

Target Alias Description ECC score Gene Family Method Actions
AT3G51950 No alias Zinc finger (CCCH-type) family protein / RNA recognition... 0.03 OrthoFinder output from all 47 species
AT5G12440 No alias CCCH-type zinc fingerfamily protein with RNA-binding domain 0.04 OrthoFinder output from all 47 species
Ala_g13284 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0004.g008616 No alias not classified & original description: CDS=390-1862 0.03 OrthoFinder output from all 47 species
Azfi_s0076.g037780 No alias not classified & original description: CDS=1-1272 0.02 OrthoFinder output from all 47 species
Cba_g31898 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g13891 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g39714 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01001467001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.07 OrthoFinder output from all 47 species
GSVIVT01037782001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
Gb_39136 No alias C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
LOC_Os07g48410.1 LOC_Os07g48410 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Len_g37038 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g23635 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40605 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_33942g0010 No alias C3H zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
MA_479847g0010 No alias C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Ore_g25621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g30445 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g13313 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010074 No alias not classified & original description: CDS=287-2170 0.03 OrthoFinder output from all 47 species
Sam_g09058 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g008600.4.1 Solyc01g008600 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Solyc11g065320.2.1 Solyc11g065320 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e001546_P001 Zm00001e001546 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e020869_P004 Zm00001e020869 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Zm00001e038256_P001 Zm00001e038256 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Zm00001e039250_P004 Zm00001e039250 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 236 256
IPR000504 RRM_dom 376 421
No external refs found!