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  5. Zm00001e035782_P001

Zm00001e035782_P001 (Zm00001e035782)


Aliases : Zm00001e035782

Description : Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana (sp|q9lpc4|ppr1_arath : 336.0)


Gene families : OG0005460 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005460_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e035782_P001
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00026400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g01970... 0.04 OrthoFinder output from all 47 species
AT1G01970 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G19520 NFD5 pentatricopeptide (PPR) repeat-containing protein 0.02 OrthoFinder output from all 47 species
Ceric.33G040200.1 Ceric.33G040200 not classified & original description: pacid=50607757... 0.02 OrthoFinder output from all 47 species
LOC_Os02g39820.1 NFD5, LOC_Os02g39820 Pentatricopeptide repeat-containing protein At1g19525... 0.02 OrthoFinder output from all 47 species
MA_436401g0010 No alias Pentatricopeptide repeat-containing protein At1g19525... 0.04 OrthoFinder output from all 47 species
Mp4g06140.1 No alias Pentatricopeptide repeat-containing protein At1g01970... 0.03 OrthoFinder output from all 47 species
Msp_g14468 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g091450.3.1 Solyc01g091450 Pentatricopeptide repeat-containing protein At1g01970... 0.08 OrthoFinder output from all 47 species
Tin_g07722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 154 188
IPR002885 Pentatricopeptide_repeat 231 257
IPR002885 Pentatricopeptide_repeat 305 330
IPR002885 Pentatricopeptide_repeat 195 224
IPR002885 Pentatricopeptide_repeat 266 289
No external refs found!