Zm00001e034917_P001 (Zm00001e034917)

Aliases : Zm00001e034917

Description : Regulator of telomere elongation helicase 1 homolog OS=Arabidopsis thaliana (sp|f4hqe2|rtel1_arath : 357.0)

Gene families : OG0002453 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002453_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e034917_P001

Target	Alias	Description	ECC score	Gene Family Method
AT1G20720	No alias	RAD3-like DNA-binding helicase protein	0.09	OrthoFinder output from all 47 species
Als_g10918	No alias	regulatory helicase *(RTEL) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.16G032600.1	Ceric.16G032600	dsDNA helicase *(FANCJ) & original description:...	0.08	OrthoFinder output from all 47 species
Ceric.20G041000.1	Ceric.20G041000	regulatory helicase *(RTEL) & original description:...	0.05	OrthoFinder output from all 47 species
Cre02.g089608	No alias	Regulator of telomere elongation helicase 1 homolog...	0.1	OrthoFinder output from all 47 species
Cre09.g397350	No alias	Regulator of telomere elongation helicase 1 homolog...	0.02	OrthoFinder output from all 47 species
GSVIVT01013389001	No alias	Regulator of telomere elongation helicase 1 homolog...	0.15	OrthoFinder output from all 47 species
GSVIVT01017107001	No alias	No description available	0.1	OrthoFinder output from all 47 species
GSVIVT01017108001	No alias	Regulator of telomere elongation helicase 1 homolog...	0.1	OrthoFinder output from all 47 species
Gb_04351	No alias	Regulator of telomere elongation helicase 1 homolog...	0.04	OrthoFinder output from all 47 species
Gb_36663	No alias	Regulator of telomere elongation helicase 1 homolog...	0.14	OrthoFinder output from all 47 species
Gb_36664	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os01g40980.1	LOC_Os01g40980	Regulator of telomere elongation helicase 1 homolog...	0.03	OrthoFinder output from all 47 species
LOC_Os09g37920.1	LOC_Os09g37920	Regulator of telomere elongation helicase 1 homolog...	0.06	OrthoFinder output from all 47 species
Len_g08849	No alias	regulatory helicase *(RTEL) & original description: none	0.04	OrthoFinder output from all 47 species
MA_10436237g0010	No alias	Regulator of telomere elongation helicase 1 homolog...	0.03	OrthoFinder output from all 47 species
Mp7g07280.1	No alias	Regulator of telomere elongation helicase 1 homolog...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002634	No alias	subunit c of V-type ATPase membrane V0 subcomplex &...	0.03	OrthoFinder output from all 47 species
Smo408754	No alias	Regulator of telomere elongation helicase 1 homolog...	0.03	OrthoFinder output from all 47 species
Solyc03g120200.2.1	Solyc03g120200	Regulator of telomere elongation helicase 1 homolog...	0.05	OrthoFinder output from all 47 species
Solyc10g079510.3.1	Solyc10g079510	Regulator of telomere elongation helicase 1 homolog...	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003678	DNA helicase activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
CC	GO:0018995	host cellular component	IEP	HCCA
CC	GO:0033643	host cell part	IEP	HCCA
CC	GO:0033646	host intracellular part	IEP	HCCA
CC	GO:0033647	host intracellular organelle	IEP	HCCA
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
CC	GO:0042025	host cell nucleus	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006555	ATP-dep_Helicase_C	544	752
IPR010614	DEAD_2	141	305

External Links

No external refs found!

Zm00001e034917_P001 (Zm00001e034917)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation