Zm00001e034087_P001 (MSH6-1, ATMSH6, MSH6,...)

Aliases : MSH6-1, ATMSH6, MSH6, Zm00001e034087

Description : component MSH6 of MSH2-x mismatch repair heterodimers

Gene families : OG0001663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001663_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e034087_P001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00029910	MSH6-1, ATMSH6,...	DNA damage response.DNA repair mechanisms.mismatch...	0.02	OrthoFinder output from all 47 species
AMTR_s00006p00242090	MSH7, ATMSH7,...	DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana	0.1	OrthoFinder output from all 47 species
AMTR_s00022p00172100	MSH7, ATMSH7,...	DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
AMTR_s00078p00191830	MSH7, ATMSH7,...	DNA damage response.DNA repair mechanisms.mismatch...	0.09	OrthoFinder output from all 47 species
AT3G24495	MSH7, ATMSH7, MSH6-2	MUTS homolog 7	0.06	OrthoFinder output from all 47 species
Azfi_s0015.g014037	MSH7, ATMSH7, MSH6-2	component *(MSH7) of MSH2-x mismatch repair heterodimers...	0.06	OrthoFinder output from all 47 species
Azfi_s0368.g067032	MSH6-1, ATMSH6, MSH6	component *(MSH6) of MSH2-x mismatch repair heterodimers...	0.06	OrthoFinder output from all 47 species
Ceric.09G018600.1	MSH6-1, ATMSH6,...	component *(MSH6) of MSH2-x mismatch repair heterodimers...	0.06	OrthoFinder output from all 47 species
Cre05.g235750	MSH6-1, ATMSH6, MSH6	DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana	0.1	OrthoFinder output from all 47 species
Ehy_g14545	MSH6-1, ATMSH6, MSH6	component *(MSH6) of MSH2-x mismatch repair heterodimers...	0.05	OrthoFinder output from all 47 species
GSVIVT01015407001	MSH7, ATMSH7, MSH6-2	DNA damage response.DNA repair mechanisms.mismatch...	0.1	OrthoFinder output from all 47 species
GSVIVT01028112001	MSH6-1, ATMSH6, MSH6	DNA damage response.DNA repair mechanisms.mismatch...	0.08	OrthoFinder output from all 47 species
Gb_07613	MSH6-1, ATMSH6, MSH6	component MSH6 of MSH2-x mismatch repair heterodimers	0.03	OrthoFinder output from all 47 species
Gb_18995	MSH7, ATMSH7, MSH6-2	DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
LOC_Os01g08540.1	MSH7, ATMSH7,...	component MSH7 of MSH2-x mismatch repair heterodimers	0.1	OrthoFinder output from all 47 species
LOC_Os09g24220.1	MSH6-1, ATMSH6,...	component MSH6 of MSH2-x mismatch repair heterodimers	0.14	OrthoFinder output from all 47 species
MA_10429110g0010	MSH6-1, ATMSH6, MSH6	component MSH6 of MSH2-x mismatch repair heterodimers	0.02	OrthoFinder output from all 47 species
MA_10435491g0030	MSH6-1, ATMSH6, MSH6	DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
MA_117644g0010	MSH7, ATMSH7, MSH6-2	DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
MA_214705g0010	MSH7, ATMSH7, MSH6-2	DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana...	0.1	OrthoFinder output from all 47 species
Mp2g14640.1	MSH6-1, ATMSH6, MSH6	component MSH6 of MSH2-x mismatch repair heterodimers	0.06	OrthoFinder output from all 47 species
Mp7g16850.1	MSH7, ATMSH7, MSH6-2	component MSH7 of MSH2-x mismatch repair heterodimers	0.15	OrthoFinder output from all 47 species
Ppi_g08246	MSH7, ATMSH7, MSH6-2	component *(MSH7) of MSH2-x mismatch repair heterodimers...	0.03	OrthoFinder output from all 47 species
Solyc01g079520.3.1	MSH6-1, ATMSH6,...	component MSH6 of MSH2-x mismatch repair heterodimers	0.12	OrthoFinder output from all 47 species
Spa_g07087	MSH7, ATMSH7, MSH6-2	component *(MSH7) of MSH2-x mismatch repair heterodimers...	0.02	OrthoFinder output from all 47 species
Tin_g15143	MSH6-1, ATMSH6, MSH6	component *(MSH6) of MSH2-x mismatch repair heterodimers...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	HCCA
CC	GO:0000775	chromosome, centromeric region	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005680	anaphase-promoting complex	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0007059	chromosome segregation	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0010639	negative regulation of organelle organization	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
BP	GO:0032780	negative regulation of ATP-dependent activity	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
CC	GO:0042555	MCM complex	IEP	HCCA
BP	GO:0043086	negative regulation of catalytic activity	IEP	HCCA
MF	GO:0043138	3'-5' DNA helicase activity	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043462	regulation of ATP-dependent activity	IEP	HCCA
BP	GO:0044092	negative regulation of molecular function	IEP	HCCA
BP	GO:0045132	meiotic chromosome segregation	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0051095	regulation of helicase activity	IEP	HCCA
BP	GO:0051097	negative regulation of helicase activity	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051129	negative regulation of cellular component organization	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
CC	GO:0098687	chromosomal region	IEP	HCCA
BP	GO:0098813	nuclear chromosome segregation	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1903046	meiotic cell cycle process	IEP	HCCA
BP	GO:1905462	regulation of DNA duplex unwinding	IEP	HCCA
BP	GO:1905463	negative regulation of DNA duplex unwinding	IEP	HCCA
BP	GO:1905774	regulation of DNA helicase activity	IEP	HCCA
BP	GO:1905775	negative regulation of DNA helicase activity	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA
BP	GO:2001251	negative regulation of chromosome organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007695	DNA_mismatch_repair_MutS-lik_N	356	471
IPR007861	DNA_mismatch_repair_MutS_clamp	853	943
IPR007696	DNA_mismatch_repair_MutS_core	670	984
IPR007860	DNA_mmatch_repair_MutS_con_dom	482	640
IPR000432	DNA_mismatch_repair_MutS_C	1048	1238
IPR019023	Lamin-B_rcpt_of_tudor	106	141

External Links

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Zm00001e034087_P001 (MSH6-1, ATMSH6, MSH6,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation